RnoALTA0045837-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000014331 | Zfp810
Description
zinc finger protein 810 [Source:MGI Symbol;Acc:MGI:2384563]
Coordinates
chr8:23279366-23280855:-
Coord C1 exon
chr8:23280749-23280855
Coord A exon
NA
Coord C2 exon
chr8:23279366-23279466
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
ATTTTTTTATCTTAAGGCAGAAC
3' ss Score
1
Exon sequences
Seq C1 exon
GTATCGACAAAGGGAATAGCCTGGTTGATACCATCCAGGAAAATGATAGCAGACATTTCTGGCAAATTGAAATCAACAGCCGTACATCAAATGAAGAACTGGTTGAA
Seq A exon
NA
Seq C2 exon
AACTGAAGATTCATGAGGAAATCCATCAAGGGACAAAGTCCTATGAATGTGAAGTATGTTTGGAAGCATTTTATCTGAAGCCACAGTATAGCACTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014331-5-5,5-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGCAAATTGAAATCAACAGCC
R:
GGACTTTGTCCCTTGATGGAT
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]