RnoEX0048427 @ rn6
Exon Skipping
Gene
ENSRNOG00000055496 | LOC103690166
Description
zinc finger protein OZF-like [Source:RGD Symbol;Acc:9236890]
Coordinates
chr8:23248516-23280855:-
Coord C1 exon
chr8:23280749-23280855
Coord A exon
chr8:23278513-23279470
Coord C2 exon
chr8:23248516-23248642
Length
958 bp
Sequences
Splice sites
3' ss Seq
ACAAATTTTTTTATCTTAAGGCA
3' ss Score
5.62
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTATCGACAAAGGGAATAGCCTGGTTGATACCATCCAGGAAAATGATAGCAGACATTTCTGGCAAATTGAAATCAACAGCCGTACATCAAATGAAGAACTGGTTGAA
Seq A exon
GCAGAACTGAAGATTCATGAGGAAATCCATCAAGGGACAAAGTCCTATGAATGTGAAGTATGTTTGGAAGCATTTTATCTGAAGCCACAGTATAGCACTGACCAGAGATACCACACATGCGAGAATCCATACAACTGTAAAAAATTTAGAGGGGCTTTCTATTCTAAGTCGACCTTCAGACCGTGTCAGAGGCTCGAGAGAGGTGAGAAACCCCACGCATGTATAGAGTGTGGGAAATCCTTCTATTGCAAGTCTCACCTCACTGTGCATCAGAGGACCCACACAGGGGAGAAGCCCTACGAATGTAATGACTGCAAGAAGGCTTTCTACAGCAGGTCCCAGCTCAATGTGCATCTGAGAACTCATACAGGTGAGAAACCCTATGAATGTAAGGAGTGCAGGAAGACTTTCTACCGCAATTCTGACCTCACAGTGCATCAGAGGACTCACACAGGCGAGAAGCCCTACGAATGCAAAGTGTGCAGTAAAGCCTTCTACTGCAATTCACAGCTCACTGTCCATCACAGGACCCATACAGGGGAGAAGCCTTATGAATGTCAAGTGTGCAATAAAGCCTTCTACTGCAAGTCACAGCTTGCTGTCCATCACAGGACCCATACGGGGGAGAAGCCTTATCAATGTCAGGAATGCAGGAAGGCATTCCAGTGCAGGTCAGACCTCACTCGGCATCTGAGAACTCATACAGGCGAGAGGCCCTATGGATGTACGGAGTGCAGGAAGGCTTTCTACCGCAAGTCAGACCTCACAGTGCATCAGAGGACACACACAGGCGAGAAGCCCTACGAATGCAAAGAGTGCAGAAAAGCCTTCTACTGCAATTCACAGCTCACTGTCCATCAAAGACAGCACACAGGGGAGAAGCCTTATGAGTGTAAAGACTGTGGGAAAGCCTTTCAGTGCAAATATGAACTCACTCGGCATCACAGAACACACACAG
Seq C2 exon
GGGTTGGTGTCATTCGAGGACGTAGCTGTGGACTTCACCTTGGAGGAGTGGCAGGACCTGAATGCTGCCCAGAGGACCCTGTACAGGGACGTGATGCTGGAGAACTACAGGAGCCTAGTGTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055496_MULTIEX1-11/12=10-C2
Average complexity
C1*
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.009 C2=0.085
Domain overlap (PFAM):
C1:
NA
A:
PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=7.8)
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
ENSRNOT00000082252fB7598
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACAAAGGGAATAGCCTGGT
R:
CCAGGAACACTAGGCTCCTGT
Band lengths:
230-1188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]