RnoEX0048433 @ rn6
Exon Skipping
Gene
ENSRNOG00000055496 | LOC103690166
Description
zinc finger protein OZF-like [Source:RGD Symbol;Acc:9236890]
Coordinates
chr8:23278513-23303081:-
Coord C1 exon
chr8:23302985-23303081
Coord A exon
chr8:23294021-23294126
Coord C2 exon
chr8:23278513-23279470
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTCCTGCCTTCACCCCACAGGTC
3' ss Score
12.68
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GACACTGCAAGACTAAACCAGAGTTCATCTTTGAACGGGGGCTTCGATTCAGGCCATGGACCACAGCCGAAGCCTCAATTCGATGCGTGCCCAGTCG
Seq A exon
GTCCTTCTGACTGATCTCTTGTAACTGTCACATTGTTATCAACAGCACGATCGCTGGGTGTGGAGTTAGGAGGAAGGAGAATTAAGAACATGAACTGAACTCTCAG
Seq C2 exon
GCAGAACTGAAGATTCATGAGGAAATCCATCAAGGGACAAAGTCCTATGAATGTGAAGTATGTTTGGAAGCATTTTATCTGAAGCCACAGTATAGCACTGACCAGAGATACCACACATGCGAGAATCCATACAACTGTAAAAAATTTAGAGGGGCTTTCTATTCTAAGTCGACCTTCAGACCGTGTCAGAGGCTCGAGAGAGGTGAGAAACCCCACGCATGTATAGAGTGTGGGAAATCCTTCTATTGCAAGTCTCACCTCACTGTGCATCAGAGGACCCACACAGGGGAGAAGCCCTACGAATGTAATGACTGCAAGAAGGCTTTCTACAGCAGGTCCCAGCTCAATGTGCATCTGAGAACTCATACAGGTGAGAAACCCTATGAATGTAAGGAGTGCAGGAAGACTTTCTACCGCAATTCTGACCTCACAGTGCATCAGAGGACTCACACAGGCGAGAAGCCCTACGAATGCAAAGTGTGCAGTAAAGCCTTCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055496_MULTIEX1-6/12=5-11
Average complexity
C3*
Mappability confidence:
96%=100=88%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.009
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=7.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGATTCAGGCCATGGACC
R:
ACACGGTCTGAAGGTCGACTT
Band lengths:
242-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]