MmuEX1028667 @ mm10
Exon Skipping
Gene
ENSMUSG00000066829 | Zfp810
Description
zinc finger protein 810 [Source:MGI Symbol;Acc:MGI:2384563]
Coordinates
chr9:22290539-22305602:-
Coord C1 exon
chr9:22305512-22305602
Coord A exon
chr9:22298417-22298509
Coord C2 exon
chr9:22290539-22290642
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTACTACTTCCACTTGCAGGGC
3' ss Score
9.58
5' ss Seq
CCGGTCAGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
ATGTAGACTCGAGTTTTCCTGGGAAATCCTCATGACATACTACTTCCAGAAGGCCCAAGGGAGGAACTCTATTCCCTGGAAGCTGGAAATG
Seq A exon
GGCACTGCATGACCAAACCAGAGCTCATCTTTGAGTGGGAGCTTCGATTTGGACCATGGACCACAGCAGAAGCCTCAGTTGGATGCGTGTCCG
Seq C2 exon
GATCATCTTGATCAAGAGGCACTAATGCCATCTCTGTTCCCGCTGACATGCTGCTGCCTTGAGAACCATAGTGAGGACGCTGGGTGTCCTGGAATCTGGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066829-'2-11,'2-7,6-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTTTTCCTGGGAAATCCTCA
R:
TCCAGATTCCAGGACACCCAG
Band lengths:
182-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types