RnoEX0048492 @ rn6
Exon Skipping
Gene
ENSRNOG00000053042 | LOC103694540
Description
zinc finger Y-chromosomal protein 2 [Source:RGD Symbol;Acc:9203794]
Coordinates
chrY:191934-214678:+
Coord C1 exon
chrY:191934-192021
Coord A exon
chrY:210037-210588
Coord C2 exon
chrY:214529-214678
Length
552 bp
Sequences
Splice sites
3' ss Seq
TTTTAATTTTAATTTTTAAGGAG
3' ss Score
7.42
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GAGCTGACTTAGTCAGAACTGAAAGCCATGGATGAAGAAGAAATTGAATTGACTCCACAGGAAGAAAACTCATTGTTTGATGGAATAG
Seq A exon
GAGCTGATGCAGTACACATGGATGGTGACCAGATTATTGTGGAAGTTCAAGAAACTGTTTTTTTATCTAATTCAGATGTAACTGTGCATAATTTTGTTCCTGATGATCCAGACTCAGTTATAATTCAAGATGTTATTGAAAATGTTCTTATTGAAGATGTTCACTGCTCAAATATTTTAGAGGAAACAGATATATCTGACAATGTCATTATTCCTGAGCAAGTGCTTGATTTAGATACAGCTGAAGAAGTGTCTTTAGCACAGTTTCCAATTCCAGACATTTTAGCTTCTAGTATTACATCAACCTCATTAACTATGCCTGAACATATCTTGATGAGTGAAGCTATACATGTGTCTGATGTAGGACACATTGAACAAGTGATTCATGATAGTCTAGTAGAAACAGAAGTCATTACTGATCCTCTGACAGCCGACATTTCAGAAATACTGGTAACAGATTGTGCTTCTGAAGCAGTCTTAGATTCCAGTGGAATGCCTCTGGAGCAGCAAGATGATACCAAAGTCAACCGTGACGATTATCTTATGATTTCTT
Seq C2 exon
TGGATGATGCTGGCAAAACAGAGAATGAAGGTTCATCTGAAGTTACCACGAATGCAGAGTCAGAAAGTGATCCTTATAAATTAAATGAAACATCTCCTGAAGTTATCAAGGTGTACATTTTTAAAGCTGACCCTGAAGAGGATGATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053042-'3-12,'3-11,5-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=0.135 C2=0.784
Domain overlap (PFAM):
C1:
NO
A:
PF047048=Zfx_Zfy_act=PU(42.9=74.6)
C2:
PF047048=Zfx_Zfy_act=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTAGTCAGAACTGAAAGCCA
R:
ATCATCCTCTTCAGGGTCAGCT
Band lengths:
230-782
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]