MmuEX0053773 @ mm10
Exon Skipping
Gene
ENSMUSG00000053211 | Zfy1
Description
zinc finger protein 1, Y-linked [Source:MGI Symbol;Acc:MGI:99212]
Coordinates
chrY:735019-759937:-
Coord C1 exon
chrY:759850-759937
Coord A exon
chrY:738592-739143
Coord C2 exon
chrY:735019-735168
Length
552 bp
Sequences
Splice sites
3' ss Seq
AATTCTTTTTATCTTTTAAGGAG
3' ss Score
8.02
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GAGCTGACTTAGTAAGAACTGAAGGCCATGGATGAAGATGAAATTGAATTGACCCCAGAAGAAGAAAAGTCATTCTTTGATGGAATAG
Seq A exon
GAGCTGATGCAGTACACATGGATAGTGACCAGATTGTTGTGGAAGTACAAGAAACTGTTTTTTTAGCTAATTCAGATGTAACTGTGCATAATTTTGTTCCTGATAATCCAGGCTCAGTTATAATTCAAGATGTTATTGAAAATGTTCTTATTGAAGATGTTCACTGTTCACATATTTTAGAAGAAACAGATATATCTGACAATGTCATTATTCCTGAGCAAGTTCTCAATTTAGGTACAGCAGAAGAAGTGTCTTTAGCACAGTTCTTAATTCCAGACATTTTAACATCTGGTATTACGTCAACCTCATTGACTATGCCTGAACATGTCTTGATGAGTGAAGCTATACATGTGTCTGATGTAGGACATTTTGAACAAGTGATTCATGATAGCCTTGTAGAAACAGAAGTCATCACTGATCCTATAACAGCTGACACTTCAGATATACTGGTAGCAGATTGTGTTTCTGAAGCAGTCTTAGATTCCAGTGGGATGCCTCTGGAGCAGCAAGATAATGACAAAATCAACTGTGAGGATTATCTGATGATGTCTT
Seq C2 exon
TGGATGAACCTAGCAAAGCAGATCTTGAAGGTTCCTCTGAAGTTACCATGAATGCAGAGTCAGGAACTGATTCTTCTAAATTGGATGAAGCATCTCCAGAAGTTATCAAGGTGTGCATTCTTAAAGCTGACTCAGAAGTGGATGAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053211-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.097 C2=0.608
Domain overlap (PFAM):
C1:
NO
A:
PF047048=Zfx_Zfy_act=PU(42.9=74.6)
C2:
PF047048=Zfx_Zfy_act=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGACTTAGTAAGAACTGAAGGC
R:
CTAATTCATCCACTTCTGAGTCAGCT
Band lengths:
238-790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types