HsaEX0072715 @ hg19
Exon Skipping
Gene
ENSG00000067646 | ZFY
Description
zinc finger protein, Y-linked [Source:HGNC Symbol;Acc:12870]
Coordinates
chrY:2821950-2843285:+
Coord C1 exon
chrY:2821950-2822038
Coord A exon
chrY:2829115-2829687
Coord C2 exon
chrY:2843136-2843285
Length
573 bp
Sequences
Splice sites
3' ss Seq
TTTAATTTTTATTCTTTAAGGAG
3' ss Score
6.75
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
Exon sequences
Seq C1 exon
GAGCTGTGACTAATGAGAATTAAAGGCCATGGATGAAGATGAATTTGAATTGCAGCCACAAGAGCCAAACTCATTTTTTGATGGAATAG
Seq A exon
GAGCTGATGCTACACACATGGATGGTGATCAGATTGTTGTGGAAATACAAGAAGCAGTTTTTGTTTCTAATATTGTGGATTCTGACATAACTGTGCATAACTTTGTTCCTGATGACCCAGACTCAGTTGTAATCCAAGATGTTGTTGAAGATGTTGTCATAGAGGAGGATGTTCAGTGCTCAGATATCTTAGAAGAGGCAGATGTATCTGAAAATGTCATCATTCCTGAGCAAGTGCTGGACTCAGATGTAACTGAAGAAGTTTCTTTACCACACTGCACAGTCCCAGATGATGTTTTAGCTTCTGACATTACTTCAACCTCAATGTCTATGCCAGAACATGTTTTAACGAGTGAATCCATGCATGTGTGTGACATTGGACATGTTGAACATATGGTGCATGATAGTGTAGTGGAAGCAGAAATCATTACTGATCCTCTGACGAGTGACATAGTTTCAGAAGAAGTATTGGTAGCAGACTGTGCCCCTGAAGCAGTCATAGATGCCAGCGGGATCTCAGTGGACCAGCAAGATAATGACAAAGCCAGCTGTGAGGACTACCTAATGATTTCGT
Seq C2 exon
TGGATGATGCTGGCAAAATAGAACATGATGGTTCCACTGGAGTGACCATCGATGCAGAATCAGAAATGGATCCTTGTAAAGTGGATAGCACTTGTCCTGAAGTCATCAAGGTGTACATTTTTAAAGCTGACCCTGGAGAAGATGACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067646_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=0.136 C2=0.455
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PU(2.5=23.8)
A:
PF047048=Zfx_Zfy_act=PU(42.1=74.0)
C2:
PF047048=Zfx_Zfy_act=FE(14.8=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTGACTAATGAGAATTAAAGGC
R:
CTAAGTCATCTTCTCCAGGGTCA
Band lengths:
238-811
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)