RnoEX0048523 @ rn6
Exon Skipping
Gene
ENSRNOG00000030666 | LOC108348140
Description
H-2 class I histocompatibility antigen, TLA(B) alpha chain-like [Source:RGD Symbol;Acc:11396749]
Coordinates
chr20:3119230-3121794:+
Coord C1 exon
chr20:3119230-3119387
Coord A exon
chr20:3119563-3119838
Coord C2 exon
chr20:3121519-3121794
Length
276 bp
Sequences
Splice sites
3' ss Seq
GACCGAGGGGGGGGGGGCAGGCT
3' ss Score
-5.83
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
CGCAGGGGAGAGTGCGAGATATAAGCTACGTGCGTCCTGGGTGGAGCAGGAGGGCCCCGAGTATTGGCAGAAGGAGACAGAGATCGTCACAAGCAATGCACAGTTTTTCCGAGGAAACCTACAGACCATGCTTGACTACTACAACCTGAGCCACGACG
Seq A exon
GCTCTCACATCATCCAGGTGATGTATGGCTGTGACGTGGAATCCGATGGGAGCCTCCTCCGCGGTTATGAGCAGTATGCCTACGATGGCCGAGATTACATCACCCTCAACGAAGATCTTAAGACTTGGACAGCAGAGGACAGGGCGGCGCAGATCACCAGACTCAAGTGGGAGCAGGCTGGTTATGCAGAGCTCCGCAGGACCTACTTAGAGGGCCCATGCAAGGATTCGCTGCTCAGATACCTAGAGAATAGAAAAGAGATGCTGCAGTGTACAG
Seq C2 exon
ATCCTCCAAAGGCACATGTGAGCCATCACCCCGGACATGAAGGTGATGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCTGACATCACTCTGATCTGGAAGAAGGAGGAGGAGGAACTGAACCAAGAGATGGAGCTTATACAGACCAGGCCTGCAGGGGATGGGACTTTTCAGAAGTGGGCAGCTCTGGTGGTGCCTTCTGGGGAGGAGCAGAAGTACACATGTCATGTGTACCATGAGGGGCTACCTGAGCCCCTCACCCTGAGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030666_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCACAAGCAATGCACAGT
R:
TGTACTTCTGCTCCTCCCCAG
Band lengths:
300-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]