RnoEX0048524 @ rn6
Exon Skipping
Gene
ENSRNOG00000030666 | LOC108348140
Description
H-2 class I histocompatibility antigen, TLA(B) alpha chain-like [Source:RGD Symbol;Acc:11396749]
Coordinates
chr20:3119563-3121794:+
Coord C1 exon
chr20:3119563-3119838
Coord A exon
chr20:3120497-3120633
Coord C2 exon
chr20:3121519-3121794
Length
137 bp
Sequences
Splice sites
3' ss Seq
GGCATCTGATCTCATTACAGATG
3' ss Score
7.14
5' ss Seq
ATTGTGAGA
5' ss Score
1.82
Exon sequences
Seq C1 exon
GCTCTCACATCATCCAGGTGATGTATGGCTGTGACGTGGAATCCGATGGGAGCCTCCTCCGCGGTTATGAGCAGTATGCCTACGATGGCCGAGATTACATCACCCTCAACGAAGATCTTAAGACTTGGACAGCAGAGGACAGGGCGGCGCAGATCACCAGACTCAAGTGGGAGCAGGCTGGTTATGCAGAGCTCCGCAGGACCTACTTAGAGGGCCCATGCAAGGATTCGCTGCTCAGATACCTAGAGAATAGAAAAGAGATGCTGCAGTGTACAG
Seq A exon
ATGGTTGTGAGACACCACGTGGTTGCTGGGATTTGAACTCAGAGCCCTGGAAAGAACAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAGCCCCCTGACTATGTGGTTTTTATTTCCTGTTCCTGTTCTGAGATT
Seq C2 exon
ATCCTCCAAAGGCACATGTGAGCCATCACCCCGGACATGAAGGTGATGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCTGACATCACTCTGATCTGGAAGAAGGAGGAGGAGGAACTGAACCAAGAGATGGAGCTTATACAGACCAGGCCTGCAGGGGATGGGACTTTTCAGAAGTGGGCAGCTCTGGTGGTGCCTTCTGGGGAGGAGCAGAAGTACACATGTCATGTGTACCATGAGGGGCTACCTGAGCCCCTCACCCTGAGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030666_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACCTACTTAGAGGGCCC
R:
GAAAAGTCCCATCCCCTGCAG
Band lengths:
257-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]