RnoEX0048935 @ rn6
Exon Skipping
Gene
ENSRNOG00000047632 | LOC683422
Description
similar to Plasma kallikrein precursor (Plasma prekallikrein) (Kininogenin) (Fletcher factor) [Source:RGD Symbol;Acc:1586868]
Coordinates
chr15:47470863-47472350:+
Coord C1 exon
chr15:47470863-47471014
Coord A exon
chr15:47471331-47471469
Coord C2 exon
chr15:47472103-47472350
Length
139 bp
Sequences
Splice sites
3' ss Seq
AGAATTTTCTTCTTAACCAGTGT
3' ss Score
4.75
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GTTTCTGCTATCATGGGAGGGAAACCTGCAAACATCTCAGAGGTCCCATGGCACGTGGGGATTATGAATCACGGTACTCATCTCTGTGGAGGATCTATTCTCAATGAGTGGTGGGTTCTATCTGCATCCCATTGCTTCGACCAAATAAACAA
Seq A exon
TGTAACAGAATGCTTGTCCTGGAGGCTTCATTCAACCAGCCACGGAATGCCATCAGGTGGTGAAACAGCCTGCACGGCTGAGTATTCTTTCTGACCTCTGGGCAGTAAGCAGATCTCTTCCCAGGATTTGATATATCTT
Seq C2 exon
CGCTAACTTGGAGATCCGTCATGGCAGAGATGACCTCAGCACAAAGAACGTGAAGCATGAGAAAGTGGACAAGTTGATCTTGCACCCAAAGTTTGATGACTGGCTCCTGGACAATGACATAGCTTTGCTCTTGCTCAAATCCCCATTAAACCTGAGTATCAACGGGATACCTATCTGCACTTCAGAACTCTCTGACTTACGGATATGGAAGAACTGCTGGGTGACAGGATGGGGAATTACTAATGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047632_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.7=92.2)
A:
PF0008921=Trypsin=PD(36.0=84.4)
C2:
PF0008921=Trypsin=FE(36.6=100)
Main Inclusion Isoform:
ENSRNOT00000072438fB7696
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCATCCCATTGCTTCGAC
R:
TGTCACCCAGCAGTTCTTCCA
Band lengths:
258-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]