RnoINT0083396 @ rn6
Intron Retention
Gene
ENSRNOG00000047632 | LOC683422
Description
similar to Plasma kallikrein precursor (Plasma prekallikrein) (Kininogenin) (Fletcher factor) [Source:RGD Symbol;Acc:1586868]
Coordinates
chr15:47470863-47472350:+
Coord C1 exon
chr15:47470863-47471014
Coord A exon
chr15:47471015-47472102
Coord C2 exon
chr15:47472103-47472350
Length
1088 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CTCTCTTTATTTTAAATGAGCGC
3' ss Score
-13.24
Exon sequences
Seq C1 exon
GTTTCTGCTATCATGGGAGGGAAACCTGCAAACATCTCAGAGGTCCCATGGCACGTGGGGATTATGAATCACGGTACTCATCTCTGTGGAGGATCTATTCTCAATGAGTGGTGGGTTCTATCTGCATCCCATTGCTTCGACCAAATAAACAA
Seq A exon
GTGAGTATTCCTGGAGGAAATGGGGATCAATATGGGTGGCAGCACCAAAGATTACGCCTAGGGGACTGTGTTAGGTTGAGGCAGGGTTTCTCTGTGTAGCCCTGGTTGTTGTGGCTCTGCAGACCAGGCTGGCCTTGAACTCATAGATCTGTTGCATTTTATTTTAAGGCATCTTACTAAATTTCTAGGATGCCTTTAACTTATTCTGTAGCTCAAAGAGACCTTGAGTTTGTAATTCTCCTGCCTTAGTTTCCCAAGTAGCTGACCCTGTAGGCCTGGGCCAACAAGCTAAAGTTAGAATTTTCTTCTTAACCAGTGTAACAGAATGCTTGTCCTGGAGGCTTCATTCAACCAGCCACGGAATGCCATCAGGTGGTGAAACAGCCTGCACGGCTGAGTATTCTTTCTGACCTCTGGGCAGTAAGCAGATCTCTTCCCAGGATTTGATATATCTTGTGAGTTTCAGGCTATGCATCTTGCTAAGTACCTGTGGACATGATCCAACTTTCCTAAGTTGGCTAGGGTCGTACATGCCTGTCACCTAGCACTCTGGAGGATGAACCTGGAGGATGATTTGTCAAGGGCAAGCTTAGGCTACATAGCAAAAACTTGTCTTAAAGACAAAGGAAAAAAAACAAACAAAAAAACCTCTAAATGGACCAAAAGGAAGTCTATCACTAACTGTTTGTTCTTGTTGGAGATAAGAGGGTGGCGCATGGGTTCAAAAATCAGAGAGACACTGGAGACACTGCTATGTGAGGGTGGGGCTCTAGTCCCTGAGCACACGTCACCAGCTCTGGGCTGGTGTGCAAGTCCTTGAGTCTCATGAGTCTTCCTGGACTTCTGCTCTACAATCAGTCAAGCCCTTCTTGAGAATCAAGGGCAGTACCTTGCTCTTTTCCCGCTGCCTTGGTGTACCCAAGTAAGATGATCAGGCCATGTGCTGGGACTCAGATCTGCCTTCCGCTGAACAGGTCCTTTTAGCCCCTCATTACTTAGACTCAGAGCCACTGGGGGCAGAGTCCTTAGGGATCTCCCATCTTCATGTCTATTGTTTACACTTTCTCTCTCTCTTTATTTTAAATGAG
Seq C2 exon
CGCTAACTTGGAGATCCGTCATGGCAGAGATGACCTCAGCACAAAGAACGTGAAGCATGAGAAAGTGGACAAGTTGATCTTGCACCCAAAGTTTGATGACTGGCTCCTGGACAATGACATAGCTTTGCTCTTGCTCAAATCCCCATTAAACCTGAGTATCAACGGGATACCTATCTGCACTTCAGAACTCTCTGACTTACGGATATGGAAGAACTGCTGGGTGACAGGATGGGGAATTACTAATGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047632:ENSRNOT00000072438:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.7=92.2)
A:
NA
C2:
PF0008921=Trypsin=FE(36.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTCAGAGGTCCCATGGCA
R:
CATCCTGTCACCCAGCAGTTC
Band lengths:
351-1439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]