RnoEX0050366 @ rn6
Exon Skipping
Gene
ENSRNOG00000016758 | Loxl2
Description
lysyl oxidase-like 2 [Source:RGD Symbol;Acc:1308435]
Coordinates
chr15:51338993-51343963:+
Coord C1 exon
chr15:51338993-51339176
Coord A exon
chr15:51342640-51342723
Coord C2 exon
chr15:51343812-51343963
Length
84 bp
Sequences
Splice sites
3' ss Seq
GAAATTTCCTGTCTTGCCAGGCA
3' ss Score
6.65
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
CAACCCTTGGTGCGACTGAGAGGTGGAGCCCAGGTCGGGGAGGGCCGCGTGGAGGTGCTCAAGAATGGAGAATGGGGTACCGTCTGCGATGACAAGTGGGACCTGGTGTCTGCCAGCGTGGTCTGCAGGGAGCTGGGCTTCGGCACAGCTAAAGAGGCTGTCACAGGCTCCAGGCTGGGGCAAG
Seq A exon
GCATTGGCTGGGAATATACAGAAGGAAAACATGGGATCCCTGCCCTCTTGCTGGGGAAGGCATCTTCAGGGAGCGAGTGCACAG
Seq C2 exon
GGATTGGGCCCATCCACCTCAACGAGGTCCAGTGCACAGGGACAGAGAAGTCCATCATAGACTGCAAGCTCAACACAGAGTCGCAGGGCTGCAACCACGAGGAAGACGCCGGAGTGCGATGCAACATCCCCATCATGGGCTTCCAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016758_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(56.7=88.7)
A:
PF0053013=SRCR=FE(22.4=100)
C2:
PF0053013=SRCR=PD(42.3=80.4)
Main Inclusion Isoform:
ENSRNOT00000085237fB7962
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACAAGTGGGACCTGGTGT
R:
CTGCGACTCTGTGTTGAGCTT
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]