RnoINT0086058 @ rn6
Intron Retention
Gene
ENSRNOG00000016758 | Loxl2
Description
lysyl oxidase-like 2 [Source:RGD Symbol;Acc:1308435]
Coordinates
chr15:51338993-51343963:+
Coord C1 exon
chr15:51338993-51339176
Coord A exon
chr15:51339177-51343811
Coord C2 exon
chr15:51343812-51343963
Length
4635 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CACATCTTTTCCCTTTCTAGGGA
3' ss Score
11.79
Exon sequences
Seq C1 exon
CAACCCTTGGTGCGACTGAGAGGTGGAGCCCAGGTCGGGGAGGGCCGCGTGGAGGTGCTCAAGAATGGAGAATGGGGTACCGTCTGCGATGACAAGTGGGACCTGGTGTCTGCCAGCGTGGTCTGCAGGGAGCTGGGCTTCGGCACAGCTAAAGAGGCTGTCACAGGCTCCAGGCTGGGGCAAG
Seq A exon
GTAAGAAATGGGGTGATGGAAGGTAGGAGCCTCTCTTTAGAGCAAAATGTGGCCTTTGGAACCTAGGTCCAGCTGGTGATCATGACTCCTCCCAATAGCAGCTTTCTCTGCTCCTTCCCTGCAGTAGCCCACCCGTCAGGGAATCCTGGAATACCCCTGCCTCCTGAGCCAGCTCCTCAGAGAATACTAAAGCCCCATCTGATGGGTTTGGAACTGCCTCCTAGAGAAAGGGAGACGAGGCAGAGCAAAATGGTAGGAGAACAACTAGTGGACAGAGTAGCCCAGGTCTCCAATGCCCTGTTCTGTACTCTCGGCTGCTCCAATGGGAAAGCCAGAATTCCAGGTCCTTCCTCCAGGAAAAGACCACAGAATCCATCAAGCATGGCTGTAACCAAAAGAACCGTCACCTCAGCTTTTCCACTCTGTTGCTGCCTTGCCAATACGGGGCTCATCCTGGCAGCAGAGAAAGGAAACAGGGTAGCCCTCTCTGATGTCATGAGACAGTCGTGAGAAGGATGCTGGTTTCTATCATGTATCCCAGACAAATCACTCCAATGACTAAGGAGCAAAAGAATGGGGAGTATTCTGTGGAGAACCCCAGGAGAAATGCTGTCCCCTTGACCACAGAACAGACCACAACCTTTCCTGGGTGAGTTCATGAAAACCACTCCGCCTTGAAAGCCCTGGTCTGTCAGGAGCTTTCCCAAGATCAAGCAGCCTCGTGAGTGCCCAGCCCTCCAGTCTTGGCCTTTTCTGGGAATCTGTTCAGCACCGACCAGCAGGGAGGCTACTATGGCAGTGGGGTTGAGGCTTGGACTATAGGCAAGGATGAGATATCCCAAGTCAGTAGTTCTCAACCTATGGGTCGCAACCTCTTTGGGGGTCACATATCAGATATTCTGACTATCAGATATTTACTTTATGGTTCATAACAGTTGCAAAATTATAGTCATGAAGTAGCTATGGAAATGATTTTATGGTTGGTTTGGGGGTCACCACAATATGAGGAAACTATTAAAGGGTCACAGCATTAGGAAGGTTGAGAATCACTCTCCTAGACTGTGAGAGGGAACCCATATTCTTTAGTGTGAGCCATCATCCCATGGAAAGGACCCAGGCAAGCTCACTGGCTGCATCCTGAGGGAAGAAACAGTCCTCCCTCACCCAGGCCATGGACACCACATCAGTGGTCCCCTCTGCTAGGACCCCAGCATCCTAGTTGAGCTTCACCTCCAGCTCAGTTAAAGAACACAGAACTCGCATGTCCTAGCATTGCAGTTCATTTGTCCTAGCTCGTCTGCTTGACCATCCTGCAGGGTGCCTTGCCCTCAGCTGCCCTGGCATGAACTGAGGAAAGACCTGTGGTCATAGACCCGCCCTGCTGGAGAGGAACTCAGTTCCTCTGATCCATTATTTGAGGAATTTGAGGCTCAGGGAACCCTAGTAGTTTGCAGAAGAAAGGCTGAAGTTTCCTCACTCTTAAATTTTTTTTGCTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACGCTATCTCCCTCCTCACCCAGTCTGGATCACATTTGATCCTTTCTTGTGCCAATGTTTCAAGTGTGCAATAATGGGTAGATGGTTTGGGGCAGCAGCAGCAGCACCAGTAGCAGCATAGGCCTCAGTGAGACAATACTCTTCAGTGTTCCCACAATCCACTCTGCCAATTGATCCACATGAAGAGTCTGTGCTTTCCTAAGGTCCATAGGACTAAGGCCACTCATCCTGAGGCATAAACAAGCAAGCATTTGATGACACAGACACCACCCATGTGTCATGAGTGGATTCTGTATGACCTAATTCTTTCATCACCCAGAGCAGCCAAAGATTTACAAGTGCCTGAGGAATTTTCGGAAGAAGAGGCCTTGGGTACCTTTGATGTTAGCCTTGAAGGCACTGAGGAAGGTTTGTGTGCCTTCTGCCACATTGGGTATATGACGGCAATAGTCAGGAAAGGAAAAGTACCACATTCAAGACAAGCCCCAGAGCAGATAGGGTCAGCTCCTGAGTCCTGGCTCTAGCCGATGGAACAAGTAACCACACCCACACCCATGGGTAGTGAGAGGACAGAGGCTGAGTCCTCATCCTGGTCTGGCTATTTACTTGTCTGGTGACCTTGCAGAACCTTCTAGCCCTGAGATTCTTCACTGTGAAACAAGGTAACTGGATAGGTGATGTGTGTGGTAGTGTCTGGCTCCAGTATTATCTGGATGAAAACTAGGGTATAGCAGGCTCTTCCCTTGGTACTTCAGGAACCAGCAACAAGGTCCCAGATGTCTGCTGACCCACTCACCTTCCCCAACAGCTGAGCCATATGAGGGCTAGGCCCATGTGCTTTAGCTCCTGTCCTTAGAGTCTGTGCCCAGCAGAAACTGCTCCGGAGATGTCCAGGGAGGGACTGAGGGAGGAAGGCACCCCTGGAAGAGGAGGCACACTCCAATTGAACAGATGTGATCAACTGAACAAACCCTTGGAGGAACCTTCCAGCTCTGTAGACCAGTGTGTTCCTGCAATAATATAATACAAACCACGGATATAATTTTGAACCTTCTCTAGCCATATGAGAAGAACTGCAGGTGAAATTAACTCTAATAATGTATCTTGTTAAACCCTGTATATCCAAAATATCATGATTCTAACATGTCATTAACAGAAATGCTGTTAACAAGATTGCTTGCATTTTCATGATATAGCCTTGTTGTTCGTCATGTATTTTATGCTTACAGATCATATACTTGCCCTGACTATGTTTTGAGTAGCCATTGGTTCCTGTGTATTGGGCAGGGTAGGGCTAAAGTGACTGTAAAAGCCTTCCGTCCAAGGTAAGAAGCACATGCGACAGGCCTGATCCATTCACAGCAGCAGATTCCCCTGACGTTTAACTGAGTTAAGATAAACTGGATGTTTGGGATCCAGTTCACAGTAAATGTCAGCTATGGGCATCTCTGTCATCATCTTCAAATTTATAACCCGAGCCCTAATCCTATGGCTCTGGCTCCCTTTGGGGGGTCTGCAATTTGTCTTAGCCTTTGTGCTTTGGATCCTTGTAATCTTCTGGCAAGTTTTCATGGAATGTTTTTACTAATTTGTAAAATTCCAAGAAATTGGAAACGTCTTCCTTTCTAAATTTCTATGGAAACAGAAACTTGGCACTTTCCTTTTAAAAGTCAGTTTTGGGCCTCAGGATACCTAAATGGTGGCTGTCTCTAGGCTCCTGGATTCCAAGGAGCCTGCGGTCATCTCCATTTTTGTTTTTGACTGCATTATGTCATAAGTCTTTGTGTGGCTCCTGCCTGCCTAGGCACTGGGAACTTTTCAAGGCAGATTCCACCTTCTCCTGAGTCCATAGCCTGATGGGTTACAGGTCAAAGGTGCTCAGTGATGTCAGCTGTATCTGTGTGGACATTGTGGAAATTTCCTGTCTTGCCAGGCATTGGCTGGGAATATACAGAAGGAAAACATGGGATCCCTGCCCTCTTGCTGGGGAAGGCATCTTCAGGGAGCGAGTGCACAGGTAGCATGAGGGCCAGAAAGACTTTTCCAATGAAATGAAGGATGGATGGGTGTCAGTGGGTAGTCTGTGGAGGATTGTGAGCCATGCAGAGGGGGGAGCTCTAGACTCCATGATGGAACCTCAGAGCCCTGTGACTGAGCTGGGAGGAGCCTGTGATCTCTGTGGCTGAGGTAGGAGGAGTGGGCTGAACTGGAGCATAAGTGGGAAGTCTCCAAGTGTAGGGCTTCCAAGATCATTTGGTGCCAGTAGACCATGGACACTGCTCTCTAAGGGCAGTGATAAGCTGTTGAAGGCATTTGGCATAAATTTAAAACCCCATGGGGAACTGAGCACTGGTGGCAGATCCCAGCACTTGGAAGGCAAAGGCAGGGGAATCTCTGAGTTCGAGGCCAACCTGATCTCTAGAGTGAGTTCCAGGGCAGCCATGGCTGCACAGAGAAACCCTGTCTTGAAAAATCAAAAACCAAACCAAACCAAACCAAACCAAACCAAAAAACAACCACTCATGAGGTTTTTATGCAGGGAAGATATTAGAATAGGGCAGAGAGATGGGGCTAAAAGTCACTTGGTCATTATCCACAGGGGCAGCAATTGTTATGGTTGAGGGTTGGTGACTAACATCCAGATTTGGGGAGATGAGGGAGCAGAATGTGGTGGGCCAATTGTCTGAGATGAGGCAGCTGGTTGCATCGTGTCCATCTGAAGTCAGAAAGGAAATAATGGACCAGAAGTGAGACCAGGCCTTCGAACCTCAAAGCCCGCTCCCCAGTGACACCTCTTCCACCAAGGCTCAGAAAGTTTTCATAGTCTTTCAAAAGCAGCTGGTGAACATGGCTTCTGGGGAACATTTTGCATTCAAAACCATATTACTGTGTGATCTGACCAAGGTCACATGGCTGCTTAGTATCGGATTTTATCTGCACTATTGGCAAAATATACACACCCTACCCCTGTTCTCCCCAGGAAGAAGGGGCCTGGGTCGGGAGAGTTTTGAAAGTGGAAGAGGCAGAGTCTGATTTCCAGTCTTTCTTGCAGGTTCCAAGAAACTTCCCAGATGATTTCACCTCACACATCTTTTCCCTTTCTAG
Seq C2 exon
GGATTGGGCCCATCCACCTCAACGAGGTCCAGTGCACAGGGACAGAGAAGTCCATCATAGACTGCAAGCTCAACACAGAGTCGCAGGGCTGCAACCACGAGGAAGACGCCGGAGTGCGATGCAACATCCCCATCATGGGCTTCCAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016758:ENSRNOT00000058663:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(56.7=88.7)
A:
NA
C2:
PF0053013=SRCR=PD(42.3=80.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]