MmuINT0091841 @ mm9
Intron Retention
Gene
ENSMUSG00000034205 | Loxl2
Description
lysyl oxidase-like 2 [Source:MGI Symbol;Acc:MGI:2137913]
Coordinates
chr14:70067074-70073340:+
Coord C1 exon
chr14:70067074-70067257
Coord A exon
chr14:70067258-70073188
Coord C2 exon
chr14:70073189-70073340
Length
5931 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ACCTTCTTTTCCCTTCCTAGGGA
3' ss Score
12.29
Exon sequences
Seq C1 exon
CAACCCTTGGTGCGCCTGAGAGGTGGAGCCCAGGTCGGGGAGGGCCGAGTGGAGGTGCTGAAGAATGGAGAATGGGGAACCATCTGCGATGACAAGTGGGACCTGGTATCTGCCAGTGTGGTCTGCCGAGAGCTGGGCTTTGGGACCGCTAAAGAGGCCATCACAGGCTCCAGACTAGGGCAAG
Seq A exon
GTAAGAAATGGGGTAGCTGAAGGTAGGAGCCTCTCAATAGAGGAAAATATGGCCCTAGGGACCTAGGTCCTGATAGTGGTGAACCTCTCTCAAGCTCAGCTTTCTCTGTTCCTCCCCTGCAGCAGCCCATTCATTAGGGAATCCTAGAACACCCCTGACTCCTGAGCCAGATCCTCAAAGAACACTAAACCCCCATTTAATGGGTTTGGAACTGCCCCCTAGAGAAAGGGTGACTGGCCAAAGAGAGCAACTAGTGGACAGACCAGCCCAGGTCTCCAATGCTCCGTTCTGTAATCTCAGCTGCTCCAATAGGAAAGCTAGAATTCCAGGTCCTTCCTCCAGGAAAAGACCTCGGAATCCATCAAGCATGGTTGCACCCAAAAGAACCGTCATAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACACAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGTGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGCTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAAAAAAAAAAGAACCGTCACCTTGGTTTTTCCACCCTGTTGCTGCCTTGTCAATACTGGGCTCCTCCTGGCAGAAGAGAAAGAAAACCGGGCAGCCCCTTCTGATGTCCTGAGACAGTCATGAGAAGGATGCTGGTTTCTATCAATTATCCCAGACAAATCACTCCTGTGAACAAGGAGCAAAAGAATGGAGAGTATTCAGTGGGGAACCCCAGGTCAAATGCTGTCCCTTTGACCACAGAATAGACCATAACCTCTTCCGGGTAAGTCCAGGAAAACCACTCATTCTTGAAAGCCCTGGTCCGTCAGGAGCTTTCCCAAGACCAAGCAGCCTCATGAGTGCCCAGCCCTCCCCTGAAGAACTGGGCTTTAAGGAAGACAGTCTTGGTCTTCTCTGGGAGTCTGTTCAGCACTGACCAGCAGGGAGGCTGCTATTGCAGTGCTGATGTGGCTTGGACTACAGACAAGAATAGGATGTCCCAAGCCAGTGGCTCTAAGCCTGTGGGTTGCAACCCGTTTGGGGGTCATGTATCAGATATCCTGAATATCAGATATTTACATTACGGTTCATAACAGTTGCAAAAATTACAGTCATGAAGTAGCTACAAAGGTAATTTTATGGATGGTTGGGGGTCACCACAATAGAAGGAAACTATATTGAAGGGTCACAGCATTAGGAAGATTAAGAATCACTCTCCTAGACTGTGAGAGGAAACCCATGCTCTCATGCATGGAGCCATCACCCCATGGAAAGGAATCTGGAGAGCTCACTGGTTGCTGCCTAAGGGAGGAAATCGCCCTCACTCACCCAGGCCATGGACACCACATCCGTTATTCCCTCTGCTAGGACTCCTGGCTAAGCTTCACCTCCAGCTCAGTTCAAGAACACAGAACTCGCATATCCTAACCATGCAGCTCATCTGCTCGACCGTCCTGCAGGGTGCCATGCCCCCAGCTACCCTGGGCATGAACAGAGAAAAGCCCTGCGGTCATGGACCCGCCCTGCTGGAGAGGAACTCAGTTCCTCTGGTCCATCATATGCGGAATTTGAGGCTCAGGGAACCCCAGTAATTGGCAGAAAGACTGAGGTTTCCAAACTCTTACATTTTTTGGCTTCCTTGTTTTGGCACTATCTCCCTCCGTGCCCAGGCTGGATCACATTTGATCCTTCCTTGTGCCAGTGTTCCAAGTGTGCAATAATGGGGTAGACGGTTTGGGGCAGCAGCAGCGTACTGTGTTATGCAGCAGTCTGTGCTATGCTACATAACAACTCATTCTCCTTAGGTCCCAGTGAGACAACCAGGCTCTTCGGTGTTCCCACTGTCCACTCTGCCAGTTGACCTACTTGTAAAGTCTGTGCTTTCCTAAGGTCCATAGGACGAGGGCCACTCATCCTGAGGCATAAACAAGCAAGCATTTGATGACATGGACATTCCATGTGTCATGAGTGGGTTCTGTATGACCTAATTCTTTCACCACCCAGAGCAGCCAAAGGTTTACAAGTGCCTGAGGAATTTTCAGAAGAAGAGGCCTTGGGTACCTTTGATGTTGGCCTTGAAGGTGCCGTGGAAGGTTCATGTGCCTTCTGCCACGTTGGGTAGATGACAGTAGTCATCAGGAAAGGAAAAGTACCACATTGAAGACAAGCCCCAGAGCAGATAGGGTCAGCTTCTGAGTCCTGGCTCTAGCTGATGGAACAAGTAACCACACCCACTCCCATGGGTAGTGAGAGGACAGAGGCTGAGTCCTCATCCTGGCCTGGCTATTTGCTTGTCTGGTGACCTTGGAGAACCTTCTGGTCCCGAGATTCTTCACTGGGAAACAAGGTAGCTGGATAGGTGATGTGTGCAGTACTGTCTGGCTCCAGTGTCTCCTGGATGGATGCTAGGGTATAGCAGGCTCTTCCCAAGTACACAGCCACAAGGTCGGTCCCAGATGTCTGCTGACACACTCACCTTCCCCAACAGCTGAACCATATATGAGGGATAGGCCTGTGTGCTTTAGCCCCTGTCCATAGAGTCTGTGCCCAGCAGGCACTGCTCTAGAGATGTCCAGGGAGAGACTGAGGGAGGAAGTCACCCCTGGAAGAGGAGGCACACTCCAATTGAACAGATATGGTCAGCTGGACAAACACTTAGTGAAACATGCCAGCTCTGTAGACCAGTGCTTTCCTGCAATAACGTAATACAACCACATCTATAATTTAAATTTTTCTAATAGCCACATGAAAAGAAATGCGGGTGAAATTAACTCTAAAATACATCTTGTTAAACACAGACTATCCAAAATATTGTGATTTTTAGCCCGTCACTGATAGAAATGCTGTTAACAAGATTGCTTGCATTTTCATAATACAGCTTTGTTATCCATCATGTATCTTATGCTTACAGTTCATAGACGTGCCCTGACTGTTTTGAGTAGCCACTGGCTCCTGGGTATCGGGCAGGGTAAGGCCAAAGAGGTGGCTGTAAAAGCCTTCTGTCCACAGCGAGTAGCACATTGACAGGTCTGTTCCACGTACAGCAGTGGATTCCCCTGGTGTTTAAATGAGTTGAGATAAACTGGATGTTTGGGATCCAATCCACAGTAAATGTCAGCTATGGACATCTCTTGTCATCATCCTCAAATTTATAACCCAAGTCCTAATCCTATGGCTCTGGCTCCCTTTGGGGGAATCTGCAATTTGTCTTAGCCTTTGTGTTTTGGATCCTTGTAATCTTCTGGCAATTTTTCATGGAATGTTTTTACTAATTTGTAAAATTCCAAGAAATTGGAAACGTCTTCCTTTATAAACTTCTGTAGAAGCAGAGGCTTGGCCCTTTCCTTCCTCAGGACACCTAGATGGTGACCATCTCTCGGCACTCTGCTTCCCTTAACAGGGCCAATGCCCTCCTGGACCCTAAGGAGCCTGTGGCCATCTCCATCTTTGTTTCTGACTGCATTATATCATATGTCTTTGTGTGGCTCCTGCCTGCCTAGGCACTGGGAACTTTTCAAAGCAGATTCTGCCTTCTTCTGAGTCCATAGCCCATGGCTGCTGGGTTATAGGTCGAAGGCGCTCAGTGATGTCAGTTGCATCTGTGTGGACATTGTGGAAATGTCCTGTCTTGCAAGGCACTGGCTGGGAATATACAGAAGGAAAACATGGGGTCCCTGCCCTCTTGGTGGGGGGAGGCATCTTCAAGGAGTGAGTGTGCAAACTGAGGCTACGGGGATGAAGCACAGACGTGGTGAAGTGAGGGCCAGAAAGACTTGTCCAATGAAGTTAAGGATGGACGGGTATCAGTGGTAGACTGTGGAGGGGTGTGGGCCATGCAGAGGGAGAAGAACTGGACTCCGTGATGGAATCCCAGAGCCCTGTGTCTGATCTGGGAGGAGCCTAAGGTTTCTGTAACTGATCCAGGAGGAGCCTGAGACCTCTGTGTCTGAGGTGGGAGGAGTGAGCTGAACTGGAACATAGGTGGGAGGTCTCCAAGTGTAGGGCCTCCAAGATCATTTGGTGCCAGTATATCATGGACACTGCTCCCTAAGGGCAATGAAAAGTCGTTGAAGGCATTTGACATGAATTTAAAACCTCATGGGGAGCTGGGTGGCGGTGGCTGATCCCAGCACTTGGGAGGCAGAGGCAGGAGGATCCCTGGGTTTGAGGCCATCTTGATCTTCAGAGCGAGTTCCAGGGCAGCCATGGCTACACAGAGAAACTCTGTCTTGAAAAGCCAAAAACCAAACCAAGCCAAAACAAAGAGCAACAACTCGTGAGGTTTTTATGCAGGGAAGATATTAGAATAGGACAGAGAGACCGGGCTAAAAGTCACTTGGTCATTGTCCACAGGGAGAGCAATTGTTATGATTGGGGAAATGGGGAGGGGGGACAAAGCATCCAGATTAGGGGAGATGAGTGAGTGGAATGTGATAGGCAGATTGCACAGGATGTGATGGAGGTACCAGAGATGATCTTGGGGTTCCACCAATGCCATGTGTCCTAGCAGGTGCCATTTTCTGGTGTGGGAAGTGCCTGGGGAGAAGCAGACTAGTGAAGATGAAAGAGTCAAGAGCAGAGACCCTTCAAGAAGCTCACATGCTTAAAACAGAGAGCGCTGGTGTGAGCAGAGGGGCCAGAGTACCCTCTCTCTCCAGTCTGAGCTCACTCTCACCACCCCACCCCCAGAAGGGCAAGTTTCCTGGCACCATCTCCATGTCGCCAGCAGCATCTCTCCATTCTGTGCTCCCAGGTCCACTCTCCACCCTCACCATCATGCCCCCTACCTCAAGGCATAGATCAGTTTGGCCAACACAGGACACTGGTGAGAACTGGAGGTGACCAGAGGAGAGAGGCTTAGGCAGTTCCCATGGTCACTGTGTCCCTCCATGAAGGGTGACAACTATTTTCTGGAGTCTTCTCTCCACACCTCTCCTAAGTGAGTTATTGTCTCTTCTCTCACTCTTAGGGGTGTGTCCAAGCCCTAGTATTATTCACCCTGGCTTCTTGACTGTTCTGGGATATACACTCCTTACACCCCACCCTTAACTGTATTTTAAAGCACCCCCTTTCTAATTCAGACCTCTTGGTTTGCATAGTCTACCTGTTTCTTATGGAGACTTACAAGTAGAGCCATAGTTACTCCTTTCAGACCCCCAAGTGCACAGAATGTGGTAACTGCAGGGTGAATTAGTGGTGTCTTCTAGTCTGACCCCTTTGTGGACGAGAGAAGCCCTGTGATCAGAGAGGCTGGATGTATGAGCTACTGTTCTCACTGGTGTGACCTGGCAAGAAATAACTTTAAAAAGAGATGTCGGGGAAGGCATGGTGTCCAGAGCATGAGGCACCTGGTCACATCGCTTCCATTTTAAGTCAGGAAGGAAGTAATGAACCAGAAGTGGGACCAAGCCTCCGAACCTCAAAGCCCACTCACTTCCCAGTGACACTTCTTCCAGCAAGGCTCAGCAAGTTTTCATAATCCTTCAAAAACAGCGCCACCAGCTGGAGAGCAAGCATTCATGCGCTTCTGGGGAACAGTTTACATCCAAAACCATAATACCGTGTGATCTGACACATGGCAGTTTGGTAGCGAATTTTATCTGCGCTTATGGCAAAATATGCACCCACCCAGTTCTCTCCAAGGAGAAGGGGACCTGGGCTGGGAGAGTTCTGAAGATGGAAGAGGCGGAGTCTGATTTCCAGGGTCTTTCTTGCAGGTTCCAGGAAACTTCCTGGATGATTTTATAGCATACACCTTCTTTTCCCTTCCTAG
Seq C2 exon
GGATTGGGCCCATCCATCTCAATGAAGTCCAGTGCACAGGGACTGAGAAGTCCATCATAGACTGCAAATTCAACACAGAGTCTCAAGGCTGCAACCATGAAGAAGATGCCGGGGTGCGATGCAACATCCCCATCATGGGTTTCCAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034205-Loxl2:NM_033325:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(56.7=88.7)
A:
NA
C2:
PF0053013=SRCR=PD(42.3=80.4)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: