MmuINT0091841 @ mm10
Intron Retention
Gene
ENSMUSG00000034205 | Loxl2
Description
lysyl oxidase-like 2 [Source:MGI Symbol;Acc:MGI:2137913]
Coordinates
chr14:69667267-69673533:+
Coord C1 exon
chr14:69667267-69667450
Coord A exon
chr14:69667451-69673381
Coord C2 exon
chr14:69673382-69673533
Length
5931 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ACCTTCTTTTCCCTTCCTAGGGA
3' ss Score
12.29
Exon sequences
Seq C1 exon
CAACCCTTGGTGCGCCTGAGAGGTGGAGCCCAGGTCGGGGAGGGCCGAGTGGAGGTGCTGAAGAATGGAGAATGGGGAACCATCTGCGATGACAAGTGGGACCTGGTATCTGCCAGTGTGGTCTGCCGAGAGCTGGGCTTTGGGACCGCTAAAGAGGCCATCACAGGCTCCAGACTAGGGCAAG
Seq A exon
GTAAGAAATGGGGTAGCTGAAGGTAGGAGCCTCTCAATAGAGGAAAATATGGCCCTAGGGACCTAGGTCCTGATAGTGGTGAACCTCTCTCAAGCTCAGCTTTCTCTGTTCCTCCCCTGCAGCAGCCCATTCATTAGGGAATCCTAGAACACCCCTGACTCCTGAGCCAGATCCTCAAAGAACACTAAACCCCCATTTAATGGGTTTGGAACTGCCCCCTAGAGAAAGGGTGACTGGCCAAAGAGAGCAACTAGTGGACAGACCAGCCCAGGTCTCCAATGCTCCGTTCTGTAATCTCAGCTGCTCCAATAGGAAAGCTAGAATTCCAGGTCCTTCCTCCAGGAAAAGACCTCGGAATCCATCAAGCATGGTTGCACCCAAAAGAACCGTCATAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACACAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGTGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGCTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAAAAAAAAAAGAACCGTCACCTTGGTTTTTCCACCCTGTTGCTGCCTTGTCAATACTGGGCTCCTCCTGGCAGAAGAGAAAGAAAACCGGGCAGCCCCTTCTGATGTCCTGAGACAGTCATGAGAAGGATGCTGGTTTCTATCAATTATCCCAGACAAATCACTCCTGTGAACAAGGAGCAAAAGAATGGAGAGTATTCAGTGGGGAACCCCAGGTCAAATGCTGTCCCTTTGACCACAGAATAGACCATAACCTCTTCCGGGTAAGTCCAGGAAAACCACTCATTCTTGAAAGCCCTGGTCCGTCAGGAGCTTTCCCAAGACCAAGCAGCCTCATGAGTGCCCAGCCCTCCCCTGAAGAACTGGGCTTTAAGGAAGACAGTCTTGGTCTTCTCTGGGAGTCTGTTCAGCACTGACCAGCAGGGAGGCTGCTATTGCAGTGCTGATGTGGCTTGGACTACAGACAAGAATAGGATGTCCCAAGCCAGTGGCTCTAAGCCTGTGGGTTGCAACCCGTTTGGGGGTCATGTATCAGATATCCTGAATATCAGATATTTACATTACGGTTCATAACAGTTGCAAAAATTACAGTCATGAAGTAGCTACAAAGGTAATTTTATGGATGGTTGGGGGTCACCACAATAGAAGGAAACTATATTGAAGGGTCACAGCATTAGGAAGATTAAGAATCACTCTCCTAGACTGTGAGAGGAAACCCATGCTCTCATGCATGGAGCCATCACCCCATGGAAAGGAATCTGGAGAGCTCACTGGTTGCTGCCTAAGGGAGGAAATCGCCCTCACTCACCCAGGCCATGGACACCACATCCGTTATTCCCTCTGCTAGGACTCCTGGCTAAGCTTCACCTCCAGCTCAGTTCAAGAACACAGAACTCGCATATCCTAACCATGCAGCTCATCTGCTCGACCGTCCTGCAGGGTGCCATGCCCCCAGCTACCCTGGGCATGAACAGAGAAAAGCCCTGCGGTCATGGACCCGCCCTGCTGGAGAGGAACTCAGTTCCTCTGGTCCATCATATGCGGAATTTGAGGCTCAGGGAACCCCAGTAATTGGCAGAAAGACTGAGGTTTCCAAACTCTTACATTTTTTGGCTTCCTTGTTTTGGCACTATCTCCCTCCGTGCCCAGGCTGGATCACATTTGATCCTTCCTTGTGCCAGTGTTCCAAGTGTGCAATAATGGGGTAGACGGTTTGGGGCAGCAGCAGCGTACTGTGTTATGCAGCAGTCTGTGCTATGCTACATAACAACTCATTCTCCTTAGGTCCCAGTGAGACAACCAGGCTCTTCGGTGTTCCCACTGTCCACTCTGCCAGTTGACCTACTTGTAAAGTCTGTGCTTTCCTAAGGTCCATAGGACGAGGGCCACTCATCCTGAGGCATAAACAAGCAAGCATTTGATGACATGGACATTCCATGTGTCATGAGTGGGTTCTGTATGACCTAATTCTTTCACCACCCAGAGCAGCCAAAGGTTTACAAGTGCCTGAGGAATTTTCAGAAGAAGAGGCCTTGGGTACCTTTGATGTTGGCCTTGAAGGTGCCGTGGAAGGTTCATGTGCCTTCTGCCACGTTGGGTAGATGACAGTAGTCATCAGGAAAGGAAAAGTACCACATTGAAGACAAGCCCCAGAGCAGATAGGGTCAGCTTCTGAGTCCTGGCTCTAGCTGATGGAACAAGTAACCACACCCACTCCCATGGGTAGTGAGAGGACAGAGGCTGAGTCCTCATCCTGGCCTGGCTATTTGCTTGTCTGGTGACCTTGGAGAACCTTCTGGTCCCGAGATTCTTCACTGGGAAACAAGGTAGCTGGATAGGTGATGTGTGCAGTACTGTCTGGCTCCAGTGTCTCCTGGATGGATGCTAGGGTATAGCAGGCTCTTCCCAAGTACACAGCCACAAGGTCGGTCCCAGATGTCTGCTGACACACTCACCTTCCCCAACAGCTGAACCATATATGAGGGATAGGCCTGTGTGCTTTAGCCCCTGTCCATAGAGTCTGTGCCCAGCAGGCACTGCTCTAGAGATGTCCAGGGAGAGACTGAGGGAGGAAGTCACCCCTGGAAGAGGAGGCACACTCCAATTGAACAGATATGGTCAGCTGGACAAACACTTAGTGAAACATGCCAGCTCTGTAGACCAGTGCTTTCCTGCAATAACGTAATACAACCACATCTATAATTTAAATTTTTCTAATAGCCACATGAAAAGAAATGCGGGTGAAATTAACTCTAAAATACATCTTGTTAAACACAGACTATCCAAAATATTGTGATTTTTAGCCCGTCACTGATAGAAATGCTGTTAACAAGATTGCTTGCATTTTCATAATACAGCTTTGTTATCCATCATGTATCTTATGCTTACAGTTCATAGACGTGCCCTGACTGTTTTGAGTAGCCACTGGCTCCTGGGTATCGGGCAGGGTAAGGCCAAAGAGGTGGCTGTAAAAGCCTTCTGTCCACAGCGAGTAGCACATTGACAGGTCTGTTCCACGTACAGCAGTGGATTCCCCTGGTGTTTAAATGAGTTGAGATAAACTGGATGTTTGGGATCCAATCCACAGTAAATGTCAGCTATGGACATCTCTTGTCATCATCCTCAAATTTATAACCCAAGTCCTAATCCTATGGCTCTGGCTCCCTTTGGGGGAATCTGCAATTTGTCTTAGCCTTTGTGTTTTGGATCCTTGTAATCTTCTGGCAATTTTTCATGGAATGTTTTTACTAATTTGTAAAATTCCAAGAAATTGGAAACGTCTTCCTTTATAAACTTCTGTAGAAGCAGAGGCTTGGCCCTTTCCTTCCTCAGGACACCTAGATGGTGACCATCTCTCGGCACTCTGCTTCCCTTAACAGGGCCAATGCCCTCCTGGACCCTAAGGAGCCTGTGGCCATCTCCATCTTTGTTTCTGACTGCATTATATCATATGTCTTTGTGTGGCTCCTGCCTGCCTAGGCACTGGGAACTTTTCAAAGCAGATTCTGCCTTCTTCTGAGTCCATAGCCCATGGCTGCTGGGTTATAGGTCGAAGGCGCTCAGTGATGTCAGTTGCATCTGTGTGGACATTGTGGAAATGTCCTGTCTTGCAAGGCACTGGCTGGGAATATACAGAAGGAAAACATGGGGTCCCTGCCCTCTTGGTGGGGGGAGGCATCTTCAAGGAGTGAGTGTGCAAACTGAGGCTACGGGGATGAAGCACAGACGTGGTGAAGTGAGGGCCAGAAAGACTTGTCCAATGAAGTTAAGGATGGACGGGTATCAGTGGTAGACTGTGGAGGGGTGTGGGCCATGCAGAGGGAGAAGAACTGGACTCCGTGATGGAATCCCAGAGCCCTGTGTCTGATCTGGGAGGAGCCTAAGGTTTCTGTAACTGATCCAGGAGGAGCCTGAGACCTCTGTGTCTGAGGTGGGAGGAGTGAGCTGAACTGGAACATAGGTGGGAGGTCTCCAAGTGTAGGGCCTCCAAGATCATTTGGTGCCAGTATATCATGGACACTGCTCCCTAAGGGCAATGAAAAGTCGTTGAAGGCATTTGACATGAATTTAAAACCTCATGGGGAGCTGGGTGGCGGTGGCTGATCCCAGCACTTGGGAGGCAGAGGCAGGAGGATCCCTGGGTTTGAGGCCATCTTGATCTTCAGAGCGAGTTCCAGGGCAGCCATGGCTACACAGAGAAACTCTGTCTTGAAAAGCCAAAAACCAAACCAAGCCAAAACAAAGAGCAACAACTCGTGAGGTTTTTATGCAGGGAAGATATTAGAATAGGACAGAGAGACCGGGCTAAAAGTCACTTGGTCATTGTCCACAGGGAGAGCAATTGTTATGATTGGGGAAATGGGGAGGGGGGACAAAGCATCCAGATTAGGGGAGATGAGTGAGTGGAATGTGATAGGCAGATTGCACAGGATGTGATGGAGGTACCAGAGATGATCTTGGGGTTCCACCAATGCCATGTGTCCTAGCAGGTGCCATTTTCTGGTGTGGGAAGTGCCTGGGGAGAAGCAGACTAGTGAAGATGAAAGAGTCAAGAGCAGAGACCCTTCAAGAAGCTCACATGCTTAAAACAGAGAGCGCTGGTGTGAGCAGAGGGGCCAGAGTACCCTCTCTCTCCAGTCTGAGCTCACTCTCACCACCCCACCCCCAGAAGGGCAAGTTTCCTGGCACCATCTCCATGTCGCCAGCAGCATCTCTCCATTCTGTGCTCCCAGGTCCACTCTCCACCCTCACCATCATGCCCCCTACCTCAAGGCATAGATCAGTTTGGCCAACACAGGACACTGGTGAGAACTGGAGGTGACCAGAGGAGAGAGGCTTAGGCAGTTCCCATGGTCACTGTGTCCCTCCATGAAGGGTGACAACTATTTTCTGGAGTCTTCTCTCCACACCTCTCCTAAGTGAGTTATTGTCTCTTCTCTCACTCTTAGGGGTGTGTCCAAGCCCTAGTATTATTCACCCTGGCTTCTTGACTGTTCTGGGATATACACTCCTTACACCCCACCCTTAACTGTATTTTAAAGCACCCCCTTTCTAATTCAGACCTCTTGGTTTGCATAGTCTACCTGTTTCTTATGGAGACTTACAAGTAGAGCCATAGTTACTCCTTTCAGACCCCCAAGTGCACAGAATGTGGTAACTGCAGGGTGAATTAGTGGTGTCTTCTAGTCTGACCCCTTTGTGGACGAGAGAAGCCCTGTGATCAGAGAGGCTGGATGTATGAGCTACTGTTCTCACTGGTGTGACCTGGCAAGAAATAACTTTAAAAAGAGATGTCGGGGAAGGCATGGTGTCCAGAGCATGAGGCACCTGGTCACATCGCTTCCATTTTAAGTCAGGAAGGAAGTAATGAACCAGAAGTGGGACCAAGCCTCCGAACCTCAAAGCCCACTCACTTCCCAGTGACACTTCTTCCAGCAAGGCTCAGCAAGTTTTCATAATCCTTCAAAAACAGCGCCACCAGCTGGAGAGCAAGCATTCATGCGCTTCTGGGGAACAGTTTACATCCAAAACCATAATACCGTGTGATCTGACACATGGCAGTTTGGTAGCGAATTTTATCTGCGCTTATGGCAAAATATGCACCCACCCAGTTCTCTCCAAGGAGAAGGGGACCTGGGCTGGGAGAGTTCTGAAGATGGAAGAGGCGGAGTCTGATTTCCAGGGTCTTTCTTGCAGGTTCCAGGAAACTTCCTGGATGATTTTATAGCATACACCTTCTTTTCCCTTCCTAG
Seq C2 exon
GGATTGGGCCCATCCATCTCAATGAAGTCCAGTGCACAGGGACTGAGAAGTCCATCATAGACTGCAAATTCAACACAGAGTCTCAAGGCTGCAACCATGAAGAAGATGCCGGGGTGCGATGCAACATCCCCATCATGGGTTTCCAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034205:ENSMUST00000022660:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(56.7=88.7)
A:
NA
C2:
PF0053013=SRCR=PD(42.3=80.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types