RnoEX0050717 @ rn6
Exon Skipping
Gene
ENSRNOG00000056184 | Lrp2
Description
LDL receptor related protein 2 [Source:RGD Symbol;Acc:68407]
Coordinates
chr3:55735895-55737497:-
Coord C1 exon
chr3:55737320-55737497
Coord A exon
chr3:55736802-55736889
Coord C2 exon
chr3:55735895-55736023
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTCAAATCTCTCCAGTGG
3' ss Score
6.82
5' ss Seq
CAGGCGAGT
5' ss Score
2.92
Exon sequences
Seq C1 exon
GTTCTCCACCATCCGCACGCCCTCACTCTGTTCGAAGACTTTGTGTACTGGACTGACCGTGGTACTCGGCAGGTTATGCAGGCCAACAAGTGGCATGGGGGGAACCAGTCAGTTGTAATGTACAGCGTTCACCAACCGCTTGGAATAACTGCCATTCATCCTTCAAGGCAACCACCTT
Seq A exon
TGGTGTCTCACACTCAGAGTCTGACCCTGTTTCTTCTGTGGCTTACATTCACCACGCTGGACTACATCATGGTCCAGTGACACACCAG
Seq C2 exon
CCCGGAATCCATGTGCCTCTGCCTCTTGCAGCCATCTTTGCCTGCTTTCTGCACAGGCGCCTAGACATTATTCTTGTGCTTGCCCTTCAGGATGGAACCTCTCCGATGATTCTGTCAACTGTGTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056184_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(25.6=18.3)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=88.6)
Main Inclusion Isoform:
ENSRNOT00000082624fB8026
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGTACTCGGCAGGTTATG
R:
GCAGAAAGCAGGCAAAGATGG
Band lengths:
173-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]