RnoEX0051355 @ rn6
Exon Skipping
Gene
ENSRNOG00000033090 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:RGD Symbol;Acc:68379]
Coordinates
chr6:21320822-21323737:-
Coord C1 exon
chr6:21323570-21323737
Coord A exon
chr6:21320966-21321049
Coord C2 exon
chr6:21320822-21320890
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCATCCCAAATCTAGCTG
3' ss Score
7.36
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
Exon sequences
Seq C1 exon
CGGATCCCCCTATGATCTCAGAAGAGAAAGGGCCCTGCTACCGCCTCGTCAGTCCTGGGAGGCAGTGTATGCACCCTCTCTCTGTTCACCTCACCAAGCAGATCTGCTGTTGTAGTGTGGGCAAGGCCTGGGGCCCACAGTGTGAGAAATGTCCCCTCCCGGGCACAG
Seq A exon
CTGCTTTTAAGGAAATCTGTCCTGGTGGAATGGGTTATACGGTTTCTGGCATTCATAGACGCAGGCCAATCCATCAGCATATAG
Seq C2 exon
CCAAGGAAGAGCCTGTGGAGGCCCTGACCTCCTCGCGGGAACATGGGCCGGGAGTGGCAGAGCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033090_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.656 C2=0.656
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(85.7=63.2)
A:
PF0068312=TB=PD(11.9=6.5)
C2:
PF0068312=TB=PD(11.9=6.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAGAAAGGGCCCTGCTA
R:
CCTCCACAGGCTCTTCCTTGG
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]