RnoEX0051342 @ rn6
Exon Skipping
Gene
ENSRNOG00000033090 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:RGD Symbol;Acc:68379]
Coordinates
chr6:21320822-21334888:-
Coord C1 exon
chr6:21334766-21334888
Coord A exon
chr6:21323570-21323737
Coord C2 exon
chr6:21320822-21321049
Length
168 bp
Sequences
Splice sites
3' ss Seq
AGGCTTGTCTCTCTCTTTAGCGG
3' ss Score
7.99
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATATTAATGAATGTCAGCTCCAAGGCGTATGCCCTAATGGGGAGTGTTTGAATACCATGGGCAGCTACAGATGCTCCTGCAAAATGGGATTTGGGCCTGACCCTACCTTTTCAAGTTGTGTGC
Seq A exon
CGGATCCCCCTATGATCTCAGAAGAGAAAGGGCCCTGCTACCGCCTCGTCAGTCCTGGGAGGCAGTGTATGCACCCTCTCTCTGTTCACCTCACCAAGCAGATCTGCTGTTGTAGTGTGGGCAAGGCCTGGGGCCCACAGTGTGAGAAATGTCCCCTCCCGGGCACAG
Seq C2 exon
CTGCTTTTAAGGAAATCTGTCCTGGTGGAATGGGTTATACGGTTTCTGGCATTCATAGACGCAGGCCAATCCATCAGCATATAGGTAAAGAAGCTGTATTTGTCAAGCCAAAGAACACTCAACCTGTTGCTAAAAGTACTCATCCTCCACCTCTCCCAGCCAAGGAAGAGCCTGTGGAGGCCCTGACCTCCTCGCGGGAACATGGGCCGGGAGTGGCAGAGCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033090-'19-18,'19-17,21-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.656
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
PF0068312=TB=PU(85.7=63.2)
C2:
PF0068312=TB=PD(11.9=6.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAATGTCAGCTCCAAGGCG
R:
ACAGGTTGAGTGTTCTTTGGCT
Band lengths:
244-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]