MmuEX6079398 @ mm10
Exon Skipping
Gene
ENSMUSG00000001870 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:MGI Symbol;Acc:MGI:109151]
Coordinates
chr17:75266488-75276623:+
Coord C1 exon
chr17:75266488-75266610
Coord A exon
chr17:75273867-75274034
Coord C2 exon
chr17:75276396-75276623
Length
168 bp
Sequences
Splice sites
3' ss Seq
AGGCTTGTCTCTTTCTTTAGCGG
3' ss Score
6.86
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATATTAATGAATGTCAGCTACAAGGTGTATGCCCTAATGGTGAGTGTTTGAATACCATGGGCAGCTACAGATGCTCCTGCAAAATGGGATTCGGGCCTGACCCTACCTTTTCAAGTTGTGTTC
Seq A exon
CGGATCCCCCTGTGATCTCAGAAGAGAAAGGGCCCTGTTACCGCCTTGTCAGTCCTGGAAGGCATTGTATGCACCCTCTCTCTGTTCATCTCACCAAGCAGATCTGCTGTTGTAGTGTGGGCAAGGCCTGGGGCCCACATTGTGAGAAATGTCCCCTCCCAGGCACAG
Seq C2 exon
CTGCTTTTAAGGAAATCTGTCCTGGTGGAATGGGTTATACGGTTTCTGGCGTTCATAGACGCAGGCCAATCCATCAGCATATAGGTAAAGAAGCTGTATATGTCAAGCCAAAGAACACTCAACCTGTTGCTAAAAGTACTCATCCTCCACCTCTCCCAGCCAAGGAAGAGCCTGTGGAGGCCCTGACCTCCTCGTGGGAACACGGGCCGAGAGGGGCGGAGCCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001870-'23-27,'23-26,28-27
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.703
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
PF0068312=TB=PU(85.7=63.2)
C2:
PF0068312=TB=PD(11.9=17.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTAATGGTGAGTGTTTGA
R:
CTGGGAGAGGTGGAGGATGAG
Band lengths:
253-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types