BtaEX6043426 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019839 | LTBP1
Description
Bos taurus latent transforming growth factor beta binding protein 1 (LTBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103091]
Coordinates
chr11:15779519-15795519:+
Coord C1 exon
chr11:15779519-15779641
Coord A exon
chr11:15792413-15792580
Coord C2 exon
chr11:15795451-15795519
Length
168 bp
Sequences
Splice sites
3' ss Seq
GCCTTATCTCTCTGCTTCAGCGG
3' ss Score
9.15
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATATTAATGAATGCCAACTACAGGGTGTGTGCCCTAATGGTGAGTGTTTGAATACCATGGGCAGCTACAGATGTACCTGCAAAGTGGGATTTGGGCCAGATCCTACCTTTTCAAGTTGTGTTC
Seq A exon
CGGACACCCCTGTGATCTCGGAAGAGAAAGGGCCGTGTTACCGACTGGTCAGTTCCGGAAGGCAGTGTATGCACCCTCTGTCTGTCCACCTCACCAAGCAGCTCTGCTGTTGTAGTGTGGGCAAGGCCTGGGGCCCGCACTGTGAGAAATGCCCCCTTCCAGGCACAG
Seq C2 exon
CCAAGGAAGAACCAGTGGAGGCCCTGACCTTCTCCCGGGAACAGGGGCCAGGAGCGGTGGAGCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019839-'39-29,'39-26,40-29=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.779
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=92.9)
A:
PF0068312=TB=PU(85.7=63.2)
C2:
PF0068312=TB=PD(7.5=12.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAATGCCAACTACAGGGTGT
R:
CTTCTGGCTCCACCGCTCC
Band lengths:
186-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]