DreEX0044075 @ danRer10
Exon Skipping
Gene
ENSDARG00000056922 | ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-091202-8]
Coordinates
chr17:23032608-23038895:+
Coord C1 exon
chr17:23032608-23032730
Coord A exon
chr17:23037199-23037366
Coord C2 exon
chr17:23038680-23038895
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTTCCACCTCCACCAACCAGCCG
3' ss Score
4.39
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ACATTGATGAATGTCAGCTTCAAGGTGTTTGTCCAAATGGAAACTGCATCAACACTGTGGGCAGCTATAGGTGTATCTGCAACCCAGGCTTTGTGCCTGATCCATCACTGACGTCCTGCTTCC
Seq A exon
CCGAAACACCTGCTCTTCGCGAGGAGAAGGGTGCTTGCTTCCGGTTTGTCGGTTCAGGGAAGCAGTGCTTGCACCCTGTGTCCACTCAGCTGAGTAAACAGTTATGCTGTTGTAGTGTGGGCAAGGCCTGGGGTCCTCATTGTGACCGCTGTCCTCTACCTGGGACAG
Seq C2 exon
CTGCGTTTAAAGACATTTGTCCTGGAGGTATGGGTTACCACGTCACCCCACCATACATTTACAAGCCCAAACCTCCTAATGGACACACTCAGACAGACAGTCAGGGGTACAACAATCCCACCATCAGACACCAAGTCCCTATGGATCCTCCAGTGCCCTTCCCCACCCTCCAGCAGCCCGTGGAGGCTCTGAGCATCACAGAGAGACAGCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056922_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.661
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
PF0068312=TB=PU(85.7=63.2)
C2:
PF0068312=TB=PD(11.9=6.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCTGATCCATCACTGACG
R:
AGGCAGCTGTCTCTCTGTGAT
Band lengths:
246-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]