GgaEX1034358 @ galGal3
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
NA
Coordinates
chr3:32439157-32443862:-
Coord C1 exon
chr3:32443740-32443862
Coord A exon
chr3:32441988-32442155
Coord C2 exon
chr3:32439157-32439390
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCACTTCCATTGCAGCTG
3' ss Score
10.2
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATATCAATGAATGTCAGTTACAGGGAGTGTGCCCTAATGGTGAGTGTTTGAATACCATGGGCAGCTACAGATGTACCTGCAAAATGGGATTTGTGCCAGATCCTACCCTTTCAAGATGCATAG
Seq A exon
CTGATAGTCCTATCGTTGCTGAAGAGAAAGGACCCTGCTACCGGTTTGTTAGTGCAGGAAAGCAATGCATGCATCCTCTTTCTGTGCAGCTCAGCAAGCAGCTTTGCTGTTGCAGTGTTGGAAAAGCCTGGGGCCCAAACTGTGAGAAGTGCCCCCTTCCAGGAACAG
Seq C2 exon
CTGCTTTTAAGGAAATCTGCCCTGGTGGAATGGGTTATACGGTTTCTGGCCCTCACAGAAACAAGCTATATCATCACCCTGCAGTTAGAGTACAGCCACCTGTCATTGGCAAGACCCCGATTACTCAACCTGTTGCTAAAGGTACTTCTCCTCCACCTCTCCCAGCAAAGGAAGAGCCGGTGGAGGCACTGACCTTCTCACAGAAAAGTGAGCCTGACATGGCTGTGCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448-'9-17,'9-16,10-17=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.506
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
PF0068312=TB=PU(85.7=63.2)
C2:
PF0068312=TB=PD(11.9=6.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGGGCAGCTACAGATGT
R:
TCTTCCTTTGCTGGGAGAGGT
Band lengths:
245-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]