RnoEX0051381 @ rn6
Exon Skipping
Gene
ENSRNOG00000012094 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:RGD Symbol;Acc:68380]
Coordinates
chr6:108506790-108511964:-
Coord C1 exon
chr6:108511842-108511964
Coord A exon
chr6:108507257-108507388
Coord C2 exon
chr6:108506790-108506915
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTCACGGCTCTGGGGACAGATA
3' ss Score
5.39
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATGTTGATGAATGTGCAACCACAGAGCCGTGTCTGGGAGGACACTGTGTCAACACCGAGGGCTCCTTCAACTGTCTGTGTGAGACTGGCTTCCAGCCCGCCCCAGACAGTGGAGAGTGTGTGG
Seq A exon
ATATTGATGAGTGTGAGGACCAAGGAGACCCAGTGTGTGGAGACTGGAGGTGTGAGAACAGCCCCGGTTCCTACCGCTGTGTCCTGGGCTGTCAGCCTGGCTTCTATGTGGCGCCCACTGGAGACTGCATTG
Seq C2 exon
ACATAGATGAATGTGCAAATGATACTGTGTGTGGGAACCATGGCTTCTGTGACAATACGGATGGCTCCTTCCGCTGCCTGTGTGACCAGGGCTTCGAGACCTCACCCTCAGGCTGGGAGTGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012094_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGATGAATGTGCAACCAC
R:
CAACACACTCCCAGCCTGAG
Band lengths:
248-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]