RnoEX0052991 @ rn6
Exon Skipping
Gene
ENSRNOG00000006209 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:RGD Symbol;Acc:1311050]
Coordinates
chr7:70571548-70572328:-
Coord C1 exon
chr7:70572228-70572328
Coord A exon
chr7:70571894-70571960
Coord C2 exon
chr7:70571548-70571648
Length
67 bp
Sequences
Splice sites
3' ss Seq
CATTGCCTCCCTTCTTAAAGCCA
3' ss Score
6.48
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
CATAGCAGCCAAACCTGGAGCTGGAATCTGACCCTGACTGGGGAGAGCTGAGTGCTGAGCCTTGGGAGCCCCTGCCAGCCACGTGCACCTGTGGACAGTGG
Seq A exon
CCAGCAGGCTCAGTTTACAAACCTGTGAGCTACTGTTGGCTGCTGCCCTCCTCCTCCCCAGTGAAAG
Seq C2 exon
AGACGTTGTGATGATGCCACTGAGGATTATGCAGCGTGGTCCAACCGGAGCGGCCAGCATGACCAGCTGACCAGGGGCTGCCTCCTGCCTTTTTTTTGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006209-'15-22,'15-21,16-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAACCTGGAGCTGGAATC
R:
CTGGTCAGCTGGTCATGCTG
Band lengths:
168-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]