RnoEX0053002 @ rn6
Exon Skipping
Gene
ENSRNOG00000014076 | Mbnl1
Description
muscleblind-like splicing regulator 1 [Source:RGD Symbol;Acc:628668]
Coordinates
chr2:150698265-150755505:+
Coord C1 exon
chr2:150698265-150698365
Coord A exon
chr2:150728419-150728862
Coord C2 exon
chr2:150755405-150755505
Length
444 bp
Sequences
Splice sites
3' ss Seq
TCCCGCCCTTCGCCTTCCAGGTT
3' ss Score
12.35
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TTTGCCACTTGTAAAGAGAGTCTAGCAGGAAACAGAGCTGTCTGAGGTATCGCAACCAGCAATGGAGCAGGTCAACAGGCAGCTGTAAACGGGGCCCAGAG
Seq A exon
GTTCCAGGCGGTGCGGTTCTTCTGCCGCTGCAGGCCGGGCCGCTGACTCTAACCTTCCGTCTAACCTTGCGGGCCTCGCAGACTGGGCGCGGAGCCCCAGGAGCTGGAGCAGCGGTGAGCGGCGCGGGCCCGGGCGAGCGGGCGAGCGGGCGGGCGGGGGCCGGGGCTGCGCGTGGGAGCTCGGCGCGTCCGCGCGCCTTCCTGGCGGGGCTGGCGCGGGGGAGGGGCCGCGCAGCGGCGGAAACCGGCGCGCGGCGATAAGAGGATGCACGGCGACATACCCCAGTCTCTCACCGCAGCCCGGAGGAGTCGGGGCGCTAGCCATGCTCCGGTGACCCGGACCCGGCCAGTTTCCTTTCCCGTGGCGGGCATCCCGGAGTAGCGATCCCACAATGCCCCGGGCAGTCGGGGCCCCGGCGGGCAGCCTGCACGGCCACGTGAGAG
Seq C2 exon
GTTGGTACTAAGAAGTGCCTTTCCTGACGTCTCTGCTGCTTGGAACCGCTTCTAGAGCAGCCTCTGCTTTTGCCTTGCTTGCTGCCAGCTAGACTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014076-'0-3,'0-2,1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTTGTAAAGAGAGTCTAGCA
R:
CTAGCTGGCAGCAAGCAAGG
Band lengths:
190-634
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]