RnoEX0053007 @ rn6
Exon Skipping
Gene
ENSRNOG00000014076 | Mbnl1
Description
muscleblind-like splicing regulator 1 [Source:RGD Symbol;Acc:628668]
Coordinates
chr2:150727382-150838555:+
Coord C1 exon
chr2:150727382-150728862
Coord A exon
chr2:150755405-150755630
Coord C2 exon
chr2:150838385-150838555
Length
226 bp
Sequences
Splice sites
3' ss Seq
CCTATCTCTTTTCTCTACAGGTT
3' ss Score
12.47
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
TGAGAAAGATACCCACCAACACCCGTGCAGCTTCTTTCCCGCCCTTCGCCTTCCAGGTTCCAGGCGGTGCGGTTCTTCTGCCGCTGCAGGCCGGGCCGCTGACTCTAACCTTCCGTCTAACCTTGCGGGCCTCGCAGACTGGGCGCGGAGCCCCAGGAGCTGGAGCAGCGGTGAGCGGCGCGGGCCCGGGCGAGCGGGCGAGCGGGCGGGCGGGGGCCGGGGCTGCGCGTGGGAGCTCGGCGCGTCCGCGCGCCTTCCTGGCGGGGCTGGCGCGGGGGAGGGGCCGCGCAGCGGCGGAAACCGGCGCGCGGCGATAAGAGGATGCACGGCGACATACCCCAGTCTCTCACCGCAGCCCGGAGGAGTCGGGGCGCTAGCCATGCTCCGGTGACCCGGACCCGGCCAGTTTCCTTTCCCGTGGCGGGCATCCCGGAGTAGCGATCCCACAATGCCCCGGGCAGTCGGGGCCCCGGCGGGCAGCCTGCACGGCCACGTGAGAG
Seq A exon
GTTGGTACTAAGAAGTGCCTTTCCTGACGTCTCTGCTGCTTGGAACCGCTTCTAGAGCAGCCTCTGCTTTTGCCTTGCTTGCTGCCAGCTAGACTGTGACGACAGCACATCCGCCCTCCACCTCTAGCCCAGACACCCCCATTTCTACTTCTAATCAGGAGAAAAGCTCTGAGTATCTGCCATTGCCCTAGGCTGCTTTAGTTTAGAAGAAAAGTTTGCTGAAAAA
Seq C2 exon
GGTCGTTGCTCCAGAGAAAACTGCAAATATCTTCATCCACCCCCTCATTTAAAAACACAATTGGAGATAAATGGGCGGAATAACTTGATTCAGCAGAAGAACATGGCCATGCTGGCCCAGCAAATGCAGTTAGCCAACGCCATGATGCCCGGTGCCCCACTGCAGCCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014076_MULTIEX1-1/11=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAAGAGGATGCACGGCGAC
R:
CCAGCATGGCCATGTTCTTCT
Band lengths:
303-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]