RnoEX0054554 @ rn6
Exon Skipping
Gene
ENSRNOG00000017513 | Miga2
Description
mitoguardin 2 [Source:RGD Symbol;Acc:1310887]
Coordinates
chr3:8944484-8947265:+
Coord C1 exon
chr3:8944484-8944570
Coord A exon
chr3:8946253-8946317
Coord C2 exon
chr3:8947167-8947265
Length
65 bp
Sequences
Splice sites
3' ss Seq
TCCTTGTCGTCCTCACCCAGCAG
3' ss Score
4.74
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGGCTTCTAGAAGAAAGGAACAACCAGGTGTTCTTCGGGGAGGTCGGCCGGCAGATGGTGACAGGCCTAATGACCAAGGCTGAGAAG
Seq A exon
CAGTGATTGATGGCCATGATGCCAGGAGTGTCAGCCCTGTCAAGTGCTGCTTTCACCTTTGCCAG
Seq C2 exon
AGTCCCAAGGGCTTCCTGGAGAGCTACGAGGAGATGTTGAACTACGCCCTGCGGCCTGAGACCTGGGCTACCACCCGGTTGGAGCTGGAGGGCAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017513_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(6.1=100)
A:
PF102654=DUF2217=PD(0.1=0.0)
C2:
PF102654=DUF2217=FE(7.0=100)
Main Inclusion Isoform:
ENSRNOT00000088509fB8740
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACAACCAGGTGTTCTTCG
R:
CTCTGCCCTCCAGCTCCAA
Band lengths:
169-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]