RnoEX0054555 @ rn6
Exon Skipping
Gene
ENSRNOG00000017513 | Miga2
Description
mitoguardin 2 [Source:RGD Symbol;Acc:1310887]
Coordinates
chr3:8944484-8947604:+
Coord C1 exon
chr3:8944484-8944570
Coord A exon
chr3:8947167-8947265
Coord C2 exon
chr3:8947470-8947604
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACTGGCTGTGCTTCTCACAGAGT
3' ss Score
8.39
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GGGCTTCTAGAAGAAAGGAACAACCAGGTGTTCTTCGGGGAGGTCGGCCGGCAGATGGTGACAGGCCTAATGACCAAGGCTGAGAAG
Seq A exon
AGTCCCAAGGGCTTCCTGGAGAGCTACGAGGAGATGTTGAACTACGCCCTGCGGCCTGAGACCTGGGCTACCACCCGGTTGGAGCTGGAGGGCAGAGGG
Seq C2 exon
GTGGCATGCATGAGCTTCTTCGACATCGTGTTGGACTTCATCCTCATGGATGCCTTTGAGGACCTAGAGAACCCTCCATCTTCGGTGCTTGCTGTCCTGCGGAACCGTTGGCTGTCTGATAGCTTCAAGGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017513_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(6.1=100)
A:
PF102654=DUF2217=FE(7.0=100)
C2:
PF102654=DUF2217=FE(9.6=100)

Main Skipping Isoform:
ENSRNOT00000088509fB8740

Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACCAGGTGTTCTTCGGG
R:
AGGACAGCAAGCACCGAAGAT
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]