GgaEX0006050 @ galGal3
Exon Skipping
Gene
ENSGALG00000004490 | FAM73B
Description
NA
Coordinates
chr17:6023768-6031205:+
Coord C1 exon
chr17:6023768-6023854
Coord A exon
chr17:6024462-6024560
Coord C2 exon
chr17:6027412-6031205
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTCTGCTCTTGCAGAAT
3' ss Score
11.82
5' ss Seq
GGGGTTGGT
5' ss Score
0.32
Exon sequences
Seq C1 exon
GAGCTGCTGGAGGATGAAAGCAATCAACTGTTTTTTGGAGAGGTTGGGAAGCAAATGGTGATAGGATTGATGACAAAAGCTGAAAAG
Seq A exon
AATCCCAAAGCTTTTCTGGAAAGCTATGAGGAGATGCTGCATTATGCACTGAAGCCAGAGACATGGCCGACCACACAGCAGGAGCTGGAGGGAAGAGGG
Seq C2 exon
CACCAGATAGTACAATATTTGAAGGACATGTTTGATCTGGACAATGTGAGATACACAACAGTGCAGCTGCTGGCAGAAGACATCTTGCAGCTGTCACGGAGGCGCAGTGAGATCCTCTTGGGATATCTGGGCACAGAGAGCTCCCCTGAGATGAATGGCACACTTCCCATTGAAAACGAGCTGCTGAAGGAGCTCATCTGATGGCAATCAGAGGAGGAAAACAGTTTTGTACAAGGACTTTTTTCCTCACAGAATTGGATTAAACTACCTGCAATGGTCAGTGGTGGCCACAAGACTATCTCAACACACAGCAGCCTGGTGGGACCTTCTGCTTTTTGCAGCCAGTACTGTTTGCTGGGATGGATCCAGGACCACTTGCCAGCTTATGGTTTGAATTTTGTCTTTGTTCCACCCTTCTGTACCTTTTATTATTTTTAATGTGTCAGATAAATCATGAACTGAATGGGCTGAGACTTTTGCCCAGTTCTCTTGAATAGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004490_MULTIEX2-1/4=C1-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(5.2=100)
A:
PF102654=DUF2217=FE(5.9=100)
C2:
PF102654=DUF2217=PD(7.8=62.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGGAGGATGAAAGCAA
R:
AAGATGTCTTCTGCCAGCAGC
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]