DreEX6082811 @ danRer10
Exon Skipping
Gene
ENSDARG00000089357 | fam73b
Description
family with sequence similarity 73, member B [Source:ZFIN;Acc:ZDB-GENE-050320-135]
Coordinates
chr21:3708981-3713037:+
Coord C1 exon
chr21:3708981-3709067
Coord A exon
chr21:3711142-3711240
Coord C2 exon
chr21:3712903-3713037
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTTCTTTGTATTTAGAGT
3' ss Score
9.43
5' ss Seq
GGGGTTTGT
5' ss Score
1.06
Exon sequences
Seq C1 exon
GTGCTGCTGCTGGATGAAACGCACAGAATGTTCTTCATGGAAACAGGGAAGCAGATGATTTCTGGACTCCTGGTCAAAGCCAACAAG
Seq A exon
AGTCCGAAGGCGTTTCTGGAGAGTTATGAAGACATGCTGCAGTACACACAGAGAGAAGAAACATGGCCCGTCAGCAAGATGGAGCTGGAAGGACGTGGG
Seq C2 exon
GTTGTCTGTATGAACTTCTTTGACATCGTGTTGGACTTTATCCTCATGGATGCGTTCGAGGATCTGGAAAGTCCTCCGTCTTCAGTGGTCGCAGTTCTGAGGAACAGATGGCTCTCGGACAGTTTTAAAGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089357-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(6.1=100)
A:
PF102654=DUF2217=FE(7.0=100)
C2:
PF102654=DUF2217=FE(9.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGATGAAACGCACAGAA
R:
GACCACTGAAGACGGAGGACT
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]