MmuEX6100265 @ mm9
Exon Skipping
Gene
ENSMUSG00000026858 | Fam73b
Description
family with sequence similarity 73, member B [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30233694-30237593:+
Coord C1 exon
chr2:30233694-30233780
Coord A exon
chr2:30237158-30237256
Coord C2 exon
chr2:30237459-30237593
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACTGGCTGTACTTCTCACAGAGT
3' ss Score
7.53
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GGGCTTCTAGAAGAAAGAAGCAACCAGATCTTCTTTGGGGAGGTCGGCCGGCAGATGGTGACGGGCCTGATGACCAAGGCTGAGAAG
Seq A exon
AGTCCCAAAGGCTTCCTGGAGAGCTATGAGGAGATGCTGAGCTACGCCCTGCGGCCTGAGACCTGGGCTACCACCCGGCTGGAGCTGGAGGGCAGAGGG
Seq C2 exon
GTGGCCTGCATGAGCTTCTTCGACATCGTGCTGGACTTCATCCTCATGGATGCCTTTGAGGACCTAGAGAACCCTCCGTCTTCGGTGCTTGCTGTCCTGAGGAACCGCTGGCTGTCTGACAGCTTCAAAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858-'18-19,'18-17,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=PD(8.5=37.3)
A:
PF102654=DUF2217=FE(5.9=100)
C2:
PF102654=DUF2217=FE(60.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGATCTTCTTTGGGGAGGT
R:
GTTCCTCAGGACAGCAAGCAC
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: