RnoEX0056256 @ rn6
Exon Skipping
Gene
ENSRNOG00000000075 | Mtf2
Description
metal response element binding transcription factor 2 [Source:RGD Symbol;Acc:1304727]
Coordinates
chr14:2685212-2700977:-
Coord C1 exon
chr14:2700740-2700977
Coord A exon
chr14:2697778-2697978
Coord C2 exon
chr14:2685212-2685410
Length
201 bp
Sequences
Splice sites
3' ss Seq
ATGCCTATGATTGTTTTCAGAAA
3' ss Score
6.33
5' ss Seq
ACTGTGAGC
5' ss Score
4.2
Exon sequences
Seq C1 exon
CAAAATGGCGAAGGGCTGTAGCGAAGTGGTCTGTGTTTGAGGCCGGTGTGAGAACGCATATTCTCCTCCCCAATCCTCGTCCCCAAGGAATTCAGTGCGTGTGTGTGCGTGAGCGCAGGGTTCCCGCTGGGGCGGGTGCCCAGTGAGTGCCCGGACTCGCGGGGAAGCGCCCACGGGAACGTGATTGCTTCTATTTTCCTGTATGAAGCGGTTGGCACCACTTAAGTGACCGAATGAG
Seq A exon
AAAGGTTTAACTGAGGAGGGAAGACCCACCCTGACTATGTGAGGCACCAAACCCATGGGCTGGGGTCCTGGATTGAATCAAATGGAGGAAGCAAGCTGAGCATGAACATTGACCTTCCTGACTGCAGATAACAGTGGGATAGCTGCCTCCTGCTGCTTCTACCATGCCTCCCCCTTCCATGATGGACTGTACTCTGAAACT
Seq C2 exon
AGACTCTACAGGAGCAGGTAATTCACTGGTCCACAAGCGGTCTCCTTCACGTCGAAACCAAAAGACCTCAGCATCCTTGAACAAGCTGTCTTTACAGGATGGACATAAAGCCAAAAAACCAGCATGTAAATTTGAAGAGGGTCAAGATGTCTTAGCTAGATGGTCAGATGGCTTGTTTTATCTTGGAACTATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000075_MULTIEX1-1/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=1.000 C2=0.343
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF150571=DUF4537=PU(31.1=28.4)
Main Inclusion Isoform:
ENSRNOT00000000086fB9075
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATGGCGAAGGGCTGTAGC
R:
GGTTTCGACGTGAAGGAGACC
Band lengths:
296-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]