RnoEX0056257 @ rn6
Exon Skipping
Gene
ENSRNOG00000000075 | Mtf2
Description
metal response element binding transcription factor 2 [Source:RGD Symbol;Acc:1304727]
Coordinates
chr14:2685212-2700977:-
Coord C1 exon
chr14:2700740-2700977
Coord A exon
chr14:2692721-2692868
Coord C2 exon
chr14:2685212-2685410
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCTTTTTTCCCTTAGCTG
3' ss Score
9.66
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CAAAATGGCGAAGGGCTGTAGCGAAGTGGTCTGTGTTTGAGGCCGGTGTGAGAACGCATATTCTCCTCCCCAATCCTCGTCCCCAAGGAATTCAGTGCGTGTGTGTGCGTGAGCGCAGGGTTCCCGCTGGGGCGGGTGCCCAGTGAGTGCCCGGACTCGCGGGGAAGCGCCCACGGGAACGTGATTGCTTCTATTTTCCTGTATGAAGCGGTTGGCACCACTTAAGTGACCGAATGAG
Seq A exon
CTGCCGAGTGGTTCATCATGGACTAGAGTAGTGGCAAGGGTACTGGAGACGTGATTGTGGTGGAGGTGTCATGGCCGATGGCTGTTACCAGAGAAGAGGAGGGAAATTGGAGCGGCACAATAGAGGGATGAAAGTTCCTACTAGGGAG
Seq C2 exon
AGACTCTACAGGAGCAGGTAATTCACTGGTCCACAAGCGGTCTCCTTCACGTCGAAACCAAAAGACCTCAGCATCCTTGAACAAGCTGTCTTTACAGGATGGACATAAAGCCAAAAAACCAGCATGTAAATTTGAAGAGGGTCAAGATGTCTTAGCTAGATGGTCAGATGGCTTGTTTTATCTTGGAACTATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000075_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.343
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF150571=DUF4537=PU(31.1=28.4)
Main Inclusion Isoform:
ENSRNOT00000000086fB9076
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGGTCTGTGTTTGAGGCC
R:
CCGCTTGTGGACCAGTGAATT
Band lengths:
255-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]