MmuEX0029979 @ mm10
Exon Skipping
Gene
ENSMUSG00000029267 | Mtf2
Description
metal response element binding transcription factor 2 [Source:MGI Symbol;Acc:MGI:105050]
Coordinates
chr5:108060350-108081023:+
Coord C1 exon
chr5:108060350-108060863
Coord A exon
chr5:108073307-108073454
Coord C2 exon
chr5:108080825-108081023
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCTTTTTTCCCTTAGCTG
3' ss Score
9.66
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTGCTCGGCAAAAAAGTGGTATATACAGTGGGGTTCTCATAAACAGTAAGGCAAAAATACTGACCAGTTCTGAGGGACCCTAAGGGGTTTTCCAGTCTCACACCCTCCTTACAGCCTCCCCCACCCTCCTAGAGTCAAGGCTAGGCCAAGTTCCATTCTCCACCCACAGGAACATTCTTGAGTAAAACGATCCTTAGAATGTACCTGATAGTTTCCTGACTCTTTGGAAAGTCCCAGGTGGAGTTCAAATGCGTGTCATGATTGCTAGCCAATAGATTTAAAGGTCAATATGCTTAGCCAATAAGTTTGAACTGTAACCTTGCTGACGTAATCTGTGCCACTAAAAAGTATAAAAACTTCTTGTAATAGTCATTGGGGTCGCCATCTTAGTAGCTCGCCTTGAGGGACTAATTGAAGGAAAACCGGGACGTTCCGGGAAAATACGCCTCTTGCTTTTGCATTAATCTGCGTCTCGGTGTCTCACTCCGGGGCATCTCGAA
Seq A exon
CTGCCGAGTGTTTCATCATGGACTAGAGTAGTGGCAAGGGTACTGGAAACGTGATTGTGGTGGAGGTGTCATGGCTGATTGCTGTTACCAGAGAAGAGGAGGGAAATTGGAGCGGCACAATAGAGGGATGAAAGTTCCTACTAGGGAG
Seq C2 exon
AGACTCTACAGGAGCAGGTAATTCACTGGTCCACAAGCGGTCTCCTTTACGTCGAAACCAAAAGACCTCAGCATCCTTGAACAAGCTGTCTTTACAGGATGGACATAAAGCCAAAAAACCAGCATGTAAATTTGAAGAGGGTCAAGATGTCTTAGCTAGATGGTCAGATGGCTTGTTTTATCTTGGAACTATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029267_MULTIEX1-4/8=C1-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.165
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF150571=DUF4537=PU(31.7=28.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGACGTAATCTGTGCCAC
R:
TGCTGAGGTCTTTTGGTTTCGA
Band lengths:
253-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types