MmuALTA0011395-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000029267 | Mtf2
Description
metal response element binding transcription factor 2 [Source:MGI Symbol;Acc:MGI:105050]
Coordinates
chr5:108065674-108069295:+
Coord C1 exon
chr5:108065674-108065965
Coord A exon
NA
Coord C2 exon
chr5:108069166-108069295
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CTATGATTGTTTTCAGAAAGGTT
3' ss Score
0.52
Exon sequences
Seq C1 exon
ATTCGGCCCCGGAGTAGCTCCGCGCTCCCAGAATGCACCGCTAGTCCGCGGGAAACCAAAATGGCGAAGGGCTGTTGCGAAGTGGTCTGTGTTTGAGGCCGGTGTGAGCACGCACATTCTCCTTCCTAACCCTCGTCCCCAAGGAACTCGGTGTGTGTGTGCGTGTGCGCAGGGCTCCCGCTGGGGCGGGTGCCCAGGGAGTGCCCGGACTCGCGGGGGAGCGCCCACGGGAACGAGATTGCTTCTATTTTCCTGTATGAAGCGGTTGGCACCACTTAAGTGACCGAATGAG
Seq A exon
NA
Seq C2 exon
GTTTAACTGAGGAGGGAAGACCCACCCTGACTATGTGAGGCCACCATACCCATGGGCTGGGGTCCTGGATTGAATCAAATGGAGGAAGCAAGCTGAGCATGAACATTGACCTTCCTGACTGCAGATATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029267-0-4,0-3,0-2-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGTATGAAGCGGTTGGC
R:
ATGGGTATGGTGGCCTCACAT
Band lengths:
96-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types