MmuEX0029979 @ mm9
Exon Skipping
Gene
ENSMUSG00000029267 | Mtf2
Description
metal response element binding transcription factor 2 [Source:MGI Symbol;Acc:MGI:105050]
Coordinates
chr5:108498181-108509860:+
Coord C1 exon
chr5:108498181-108498382
Coord A exon
chr5:108502326-108502473
Coord C2 exon
chr5:108509844-108509860
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCTTTTTTCCCTTAGCTG
3' ss Score
9.66
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAAGGTTTAACTGAGGAGGGAAGACCCACCCTGACTATGTGAGGCCACCATACCCATGGGCTGGGGTCCTGGATTGAATCAAATGGAGGAAGCAAGCTGAGCATGAACATTGACCTTCCTGACTGCAGATATCAGTGCGATAGCTGTCTCCTGCTTCTTCTACTATGCCTCCCCCTTCCATGATGGACTGTACTCTGAAACT
Seq A exon
CTGCCGAGTGTTTCATCATGGACTAGAGTAGTGGCAAGGGTACTGGAAACGTGATTGTGGTGGAGGTGTCATGGCTGATTGCTGTTACCAGAGAAGAGGAGGGAAATTGGAGCGGCACAATAGAGGGATGAAAGTTCCTACTAGGGAG
Seq C2 exon
AGACTCTACAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029267-'2-8,'2-5,5-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.223
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF150571=DUF4537=PU(31.7=28.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: