MmuEX0029976 @ mm9
Exon Skipping
Gene
ENSMUSG00000029267 | Mtf2
Description
metal response element binding transcription factor 2 [Source:MGI Symbol;Acc:MGI:105050]
Coordinates
chr5:108494693-108502473:+
Coord C1 exon
chr5:108494693-108494984
Coord A exon
chr5:108498181-108498382
Coord C2 exon
chr5:108502326-108502473
Length
202 bp
Sequences
Splice sites
3' ss Seq
ATGCCTATGATTGTTTTCAGAAA
3' ss Score
6.33
5' ss Seq
ACTGTGAGC
5' ss Score
4.2
Exon sequences
Seq C1 exon
ATTCGGCCCCGGAGTAGCTCCGCGCTCCCAGAATGCACCGCTAGTCCGCGGGAAACCAAAATGGCGAAGGGCTGTTGCGAAGTGGTCTGTGTTTGAGGCCGGTGTGAGCACGCACATTCTCCTTCCTAACCCTCGTCCCCAAGGAACTCGGTGTGTGTGTGCGTGTGCGCAGGGCTCCCGCTGGGGCGGGTGCCCAGGGAGTGCCCGGACTCGCGGGGGAGCGCCCACGGGAACGAGATTGCTTCTATTTTCCTGTATGAAGCGGTTGGCACCACTTAAGTGACCGAATGAG
Seq A exon
AAAGGTTTAACTGAGGAGGGAAGACCCACCCTGACTATGTGAGGCCACCATACCCATGGGCTGGGGTCCTGGATTGAATCAAATGGAGGAAGCAAGCTGAGCATGAACATTGACCTTCCTGACTGCAGATATCAGTGCGATAGCTGTCTCCTGCTTCTTCTACTATGCCTCCCCCTTCCATGATGGACTGTACTCTGAAACT
Seq C2 exon
CTGCCGAGTGTTTCATCATGGACTAGAGTAGTGGCAAGGGTACTGGAAACGTGATTGTGGTGGAGGTGTCATGGCTGATTGCTGTTACCAGAGAAGAGGAGGGAAATTGGAGCGGCACAATAGAGGGATGAAAGTTCCTACTAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029267-'0-5,'0-2,2-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAATGGCGAAGGGCTGTTG
R:
CACCTCCACCACAATCACGTT
Band lengths:
304-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: