RnoEX0057039 @ rn6
Exon Skipping
Gene
ENSRNOG00000025757 | Myh6
Description
myosin heavy chain 6 [Source:RGD Symbol;Acc:62029]
Coordinates
chr15:33614301-33615342:-
Coord C1 exon
chr15:33614953-33615342
Coord A exon
chr15:33614509-33614635
Coord C2 exon
chr15:33614301-33614419
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTGCTCGTTAATGCCTGAAGGCA
3' ss Score
1.63
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
Exon sequences
Seq C1 exon
GCACGCATCGAGGAGCTGGAGGAGGAGCTAGAGGCCGAGCGCACAGCCCGGGCCAAGGTGGAGAAGCTGCGCTCAGACCTGACCCGGGAGCTGGAGGAGATCAGTGAGAGGCTAGAGGAAGCCGGTGGGGCCACATCTGTGCAGATAGAGATGAACAAGAAGCGCGAGGCCGAGTTCCAGAAGATGCGGCGGGACCTGGAGGAGGCCACGCTGCAGCATGAGGCCACAGCCGCGGCCCTGCGCAAGAAGCACGCAGACAGCGTGGCCGAGCTGGGCGAGCAGATAGACAATCTACAGCGGGTGAAGCAGAAGCTGGAGAAAGAGAAGAGCGAGTTCAAACTGGAGCTGGATGACGTCACCTCCAACATGGAGCAGATCATCAAGGCCAAG
Seq A exon
GCAAACCTGGAGAAAGTGTCCCGGACACTGGAGGACCAGGCCAATGAATACCGGGTGAAGTTGGAAGAAGCCCAGCGCTCCCTCAATGACTTCACCACACAGCGAGCCAAGCTGCAGACAGAGAACG
Seq C2 exon
GCGAGCTGGCTAGGCAACTGGAAGAAAAGGAGGCACTGATTTCCCAGCTGACCCGGGGCAAGCTCTCCTATACCCAGCAGATGGAGGACCTCAAGAGGCAGCTGGAGGAGGAAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025757-'48-51,'48-50,49-51
Average complexity
S
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=0.457 C2=0.425
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.6=100),PF0003816=Filament=PU(10.7=10.8)
A:
PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=FE(32.6=100)
C2:
PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(30.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCGAGTTCCAGAAGATG
R:
TTCTTCCAGTTGCCTAGCCAG
Band lengths:
251-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]