BtaEX6051715 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040053 | MYH7
Description
myosin-7 [Source:RefSeq peptide;Acc:NP_777152]
Coordinates
chr10:21367507-21368581:+
Coord C1 exon
chr10:21367507-21367896
Coord A exon
chr10:21368245-21368371
Coord C2 exon
chr10:21368463-21368581
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTGTCCCATACCGTCTGAAGGCC
3' ss Score
4.21
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
Exon sequences
Seq C1 exon
GCACGCATAGAGGAGCTGGAGGAGGAGCTGGAGGCTGAGCGCACCGCCCGGGCCAAGGTGGAGAAGCTGCGCTCAGACCTGTCCCGGGAGCTGGAGGAGATCAGCGAGCGGCTGGAGGAGGCCGGCGGGGCCACGTCCGTGCAGATCGAGATGAACAAGAAGCGCGAGGCTGAGTTCCAGAAGATGAGGCGGGACCTGGAGGAGGCCACGCTGCAGCACGAGGCCACGGCGGCCGCCCTGCGCAAGAAGCACGCCGACAGCGTGGCTGAGCTGGGCGAGCAGATTGACAACCTGCAGCGCGTGAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGTTCAAGCTGGAGCTGGACGACGTCACGTCCAACATGGAGCAGATCATCAAGGCCAAG
Seq A exon
GCCAACCTGGAGAAGATGTCCCGGACACTGGAGGACCAGGCCAATGAGTACCGGGCGAAGCTAGAAGAGGCCCAGCGCTCCCTCAATGACTTTTCCACCCAGCGAGCCAAGCTGCAGACCGAGAACG
Seq C2 exon
GTGAGCTGTCCCGGCAGCTGGAGGAAAAGGAGGCACTGATCTCCCAGCTGACCCGAGGGAAGCTGTCCTACACCCAGCAGCTGGAGGACCTCAAGAGGCAGCTGGAAGAGGAGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040053-'25-26,'25-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.585 A=0.930 C2=0.475
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.0=100),PF059116=DUF869=PU(31.4=36.9),PF0003816=Filament=PU(2.6=2.3)
A:
PF0157614=Myosin_tail_1=FE(4.9=100),PF059116=DUF869=FE(27.5=100),PF0003816=Filament=FE(36.2=100),PF0003816=Filament=PU(2.0=14.0)
C2:
PF0157614=Myosin_tail_1=FE(4.5=100),PF059116=DUF869=FE(25.5=100),PF0003816=Filament=FE(33.6=100),PF0003816=Filament=FE(13.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCCAGAAGATGAGGCGG
R:
TCAGTGCCTCCTTTTCCTCCA
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]