GgaEX6016770 @ galGal4
Exon Skipping
Gene
ENSGALG00000013781 | MYH7
Description
Gallus gallus myosin, heavy chain 7, cardiac muscle, beta (MYH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001001302]
Coordinates
chr19:20322-21168:+
Coord C1 exon
chr19:20322-20711
Coord A exon
chr19:20821-20947
Coord C2 exon
chr19:21050-21168
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCTTCCCTTCCTTCTTCTAGACC
3' ss Score
11.26
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GCACGGATTGAGGAGCTGGAGGAGGAACTAGAGGCAGAGCGGACGGGCCGGGCTAAGGTGGAGAAGCTGCGCTCAGAGCTGTTGCAGGAACTGGAGGAGACCAGTGAGCGGCTGGAGGAGGCAGGTGGTGCCACTTCAGTGCAGCTCGAGCTTAACAAGAAGCGGGAAGCCGAATTCCAGAAGCTGCGGAGGGACCTGGAGGAGGCCACATTGCAGCACGAGGCCACGGCTGCCACGCTGCGCAAGAAGCATGCTGACAGTGTAGCTGAGTTGAGTGAGCAGCTTGACAACCTGCAGCGTGTCAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGCTCAAGCTGGAGCTGGATGATGTCAACTCCAACACGGAGCAGCTCATCAAGGCCAAG
Seq A exon
ACCAACCTGGAGAAGATGTGCCGCACCACAGAAGACCAGATGAATGAGCACCGCAGCAAGTTGGAGGAGGCTCAGCGCACTGTCACTGACCTCAGCACCCAGCGAGCCAAGCTCCAGACAGAGAACA
Seq C2 exon
GTGAGCTCTCAAGGCAGCTGGAGGAGAAGGAAGCTTTCATCAACCAGCTGACGCGAGGGAAACTCACCTACACTCAGCAGCTGGAGGACCTCAAGAGGCAGCTGGAGGAGGAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781-'29-29,'29-28,30-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=1.000 C2=0.500
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.0=100)
A:
PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=PU(34.9=88.4),PF0003816=Filament=PU(2.6=18.6)
C2:
PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(35.8=100),PF0003816=Filament=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTCCAGAAGCTGCGGAGG
R:
AAGCTTCCTTCTCCTCCAGCT
Band lengths:
255-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]