GgaEX6016770 @ galGal3

Exon Skipping

Gene

ENSGALG00000013781 | Q90WH5_CHICK

Description

NA

Coordinates

chr19:14921-15767:+

Coord C1 exon

chr19:14921-15310

Coord A exon

chr19:15420-15546

Coord C2 exon

chr19:15649-15767

Length

127 bp

Sequences

Splice sites

3' ss Seq

CCTTCCCTTCCTTCTTCTAGACC

3' ss Score

11.26

5' ss Seq

ACAGTGAGT

5' ss Score

8.34

Exon sequences

Seq C1 exon

GCACGGATTGAGGAGCTGGAGGAGGAACTAGAGGCAGAGCGGACGGGCCGGGCTAAGGTGGAGAAGCTGCGCTCAGAGCTGTTGCAGGAACTGGAGGAGACCAGTGAGCGGCTGGAGGAGGCAGGTGGTGCCACTTCAGTGCAGCTCGAGCTTAACAAGAAGCGGGAAGCCGAATTCCAGAAGCTGCGGAGGGACCTGGAGGAGGCCACATTGCAGCACGAGGCCACGGCTGCCACGCTGCGCAAGAAGCATGCTGACAGTGTAGCTGAGTTGAGTGAGCAGCTTGACAACCTGCAGCGTGTCAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGCTCAAGCTGGAGCTGGATGATGTCAACTCCAACACGGAGCAGCTCATCAAGGCCAAG

Seq A exon

ACCAACCTGGAGAAGATGTGCCGCACCACAGAAGACCAGATGAATGAGCACCGCAGCAAGTTGGAGGAGGCTCAGCGCACTGTCACTGACCTCAGCACCCAGCGAGCCAAGCTCCAGACAGAGAACA

Seq C2 exon

GTGAGCTCTCAAGGCAGCTGGAGGAGAAGGAAGCTTTCATCAACCAGCTGACGCGAGGGAAACTCACCTACACTCAGCAGCTGGAGGACCTCAAGAGGCAGCTGGAGGAGGAGGCCAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000013781-'25-30,'25-29,26-30=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.657 A=1.000 C2=0.500

Domain overlap (PFAM):

C1:

PF045827=Reo_sigmaC=PD(49.3=53.1),PF0157614=Myosin_tail_1=FE(37.7=100),PF079267=TPR_MLP1_2=PD(97.7=97.7),PF059116=DUF869=PU(29.4=36.9)

A:

PF0157614=Myosin_tail_1=FE(12.3=100),PF059116=DUF869=FE(25.8=100),PF0205011=FliJ=PU(42.7=81.4),PF0003816=Filament=PU(34.5=88.4),PF0003816=Filament=PU(5.4=16.3)

C2:

PF0157614=Myosin_tail_1=FE(11.4=100),PF059116=DUF869=FE(23.9=100),PF0205011=FliJ=FE(47.6=100),PF0003816=Filament=FE(35.5=100),PF0003816=Filament=FE(30.0=100)

Main Inclusion Isoform:

ENSGALP00000039921