RnoEX0057422 @ rn6
Exon Skipping
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82203519-82207390:+
Coord C1 exon
chr8:82203519-82203600
Coord A exon
chr8:82204244-82204384
Coord C2 exon
chr8:82207265-82207390
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTATCTCCGGGATACCCCAGCAC
3' ss Score
1.15
5' ss Seq
TTGGTAACT
5' ss Score
4.27
Exon sequences
Seq C1 exon
TTTTGAGACGTTTGATGTAAACAGCTTTGAACAGTTCTGCATCAATTACGCTAACGAAAAGCTGCAGCAGCAGTTTAACCTG
Seq A exon
CACGTCTTTAAACTTGAGCAAGAGGAATACATGAAGGAGGACATCCCTTGGACTCTGATAGACTTCTATGACAATCAACCTGTGATTGACCTGATCGAAGCCAAAATGGGCATTTTGGAGTTGCTGGATGAAGAATGCTTG
Seq C2 exon
TTGCCTCATGGAACTGATGAAAACTGGCTTCAAAAGCTGTATAACAATTTTGTCAACAAGAACTCTTTATTCGAGAAGCCTAGAATGTCAAACTCATCCTTCATCATCCAACATTTTGCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356-'16-15,'16-14,17-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.0=100)
A:
PF0006316=Myosin_head=FE(6.8=100)
C2:
PF0006316=Myosin_head=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTAAACAGCTTTGAACAGTTCTGC
R:
CTTGTCAGCAAAATGTTGGATGA
Band lengths:
194-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]