RnoEX0057421 @ rn6
Exon Skipping
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82199032-82204384:+
Coord C1 exon
chr8:82199032-82199297
Coord A exon
chr8:82203519-82203600
Coord C2 exon
chr8:82204244-82204384
Length
82 bp
Sequences
Splice sites
3' ss Seq
ATTGTTCAACTGTGTTTCAGTTT
3' ss Score
7.91
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GAGGATGACAGTCACCTGAAGGTGTTCTGTGAGCTCTTGGGCCTGGAGACTATCAAAGTGGCTCAGTGGCTATGCAACCGAAAAATAGTGACCTCCTCAGAAACTGTGGTGAAGCCCATGACCAGGCCTCAGGCCATCAATGCCAGGGACGCGCTGGCCAAAAAGATCTACGCTCACCTGTTCGACTTCATTGTAGAGCAAATCAATCAGGCATTGCACTTCTCAGGCAAGCAGCACACTTTTATTGGTGTTTTGGACATTTATGG
Seq A exon
TTTTGAGACGTTTGATGTAAACAGCTTTGAACAGTTCTGCATCAATTACGCTAACGAAAAGCTGCAGCAGCAGTTTAACCTG
Seq C2 exon
CACGTCTTTAAACTTGAGCAAGAGGAATACATGAAGGAGGACATCCCTTGGACTCTGATAGACTTCTATGACAATCAACCTGTGATTGACCTGATCGAAGCCAAAATGGGCATTTTGGAGTTGCTGGATGAAGAATGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356-'15-14,'15-13,16-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(13.1=100)
A:
PF0006316=Myosin_head=FE(4.0=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCACTTCTCAGGCAAGCA
R:
TCCAGCAACTCCAAAATGCCC
Band lengths:
182-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]