HsaEX6074810 @ hg38
Exon Skipping
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52253317-52261127:-
Coord C1 exon
chr15:52260902-52261127
Coord A exon
chr15:52256639-52256720
Coord C2 exon
chr15:52253317-52253457
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTGTTTAAATTGTATTTCAGTTT
3' ss Score
7.9
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
GAGGATGACAGTCACCTGAAGGTGTTCTGTGAGCTCCTGGGCCTGGAGAGTGGCAGAGTTGCTCAGTGGCTGTGCAATCGCAAAATCGTCACAAGCTCTGAGACGGTGGTAAAACCCATGACCAGGCCTCAGGCTGTCAACGCCAGGGATGCACTGGCCAAAAAGATCTATGCTCACCTGTTCGACTTCATTGTGGAGAGAATTAACCAAGCGTTGCAGTTTTCAG
Seq A exon
TTTTGAAACCTTTGATGTGAACAGCTTTGAACAATTTTGCATCAATTACGCTAATGAAAAACTGCAACAACAGTTTAACATG
Seq C2 exon
CATGTCTTCAAACTGGAACAAGAAGAATACATGAAGGAAGATATACCTTGGACGCTGATAGATTTTTATGACAATCAACCAGTTATTGACCTGATTGAAGCAAAAATGGGAATTCTGGAGTTACTGGATGAAGAATGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833-'23-18,'23-17,27-18=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(20.9=100)
A:
PF0006316=Myosin_head=PD(0.6=28.6)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAAAACCCATGACCAGGCC
R:
TCAGCGTCCAAGGTATATCTTCCT
Band lengths:
177-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains