BtaEX6053685 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58208365-58215148:+
Coord C1 exon
chr10:58208365-58208630
Coord A exon
chr10:58212760-58212841
Coord C2 exon
chr10:58215008-58215148
Length
82 bp
Sequences
Splice sites
3' ss Seq
TAGTTTAAATTGTATTTCAGTTT
3' ss Score
5.1
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GAGGATGATGATCACCTGGAGGTGTTCTGTGAGCTCCTGGGCCTGGAGAGTGGCAGAGTCGCTCAGTGGCTGTGTAATCGCAAGATCGTCACAACCTCCGAGACAGTGGTGAAGCCCATGACCAGGCCCCAGGCTGTCAATGCCAGGGATGCACTGGCCAAAAAGATCTACGCTCACCTGTTTGACTACATTGTGGAGAGAATTAACCAAGCCTTGCAGTTTTCAGGCAAGCAGCACACTTTTATTGGTGTTTTGGACATTTATGG
Seq A exon
TTTTGAAACCTTTGATGTGAACAGCTTTGAACAGTTTTGCATCAATTATGCTAATGAAAAGCTGCAACAGCAGTTTAACCTG
Seq C2 exon
CATGTCTTTAAACTTGAACAAGAAGAGTATATGAAGGAAGACATTCCTTGGACTCTGATAGACTTTTATGACAACCAACCAGTCATTGACCTGATTGAAGCAAAAATGGGCATTTTGGAGTTACTGGATGAAGAATGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(13.1=100)
A:
PF0006316=Myosin_head=FE(4.0=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCTTGCAGTTTTCAGGC
R:
GCCCATTTTTGCTTCAATCAGGT
Band lengths:
170-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]