RnoEX0057487 @ rn6
Exon Skipping
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24800492-24802051:-
Coord C1 exon
chr18:24801867-24802051
Coord A exon
chr18:24801115-24801273
Coord C2 exon
chr18:24800492-24800613
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTCATTCTGTCCAGAAC
3' ss Score
8.35
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
ACCTACACGGGTTCCATCCTGGTGGCGGTGAACCCATTCCAGATGCTGCCCCTGTACACCCTGGAGCAGGTACAAATCTACTACAGCCGCCACATGGGCGAGCTGCCTCCCCATGTCTTTGCCATTGCCAACAGCTGCTACTTCAACATGAAGAAGAACAAGAGGGACCAGTGTTGCATCATCAG
Seq A exon
AACCCCAGCCTGTGGAAATGTGCCAACCATATTTAGGATGTGTCTTCCCACTTGGAGTAACCTAATCTAGATAATCTCACAGACACACCATACCAGAGGCTTGGCTCTTTGGTGATTCGAGAGCCTGCCAGGCTGACAGTCAATAGTAAACATCCCAAG
Seq C2 exon
TGGTGAGTCTGGCGCTGGGAAGACCGAGACCACCAAGCTCATCCTTCAGTTCCTGGCCACAGTCAGCGGCCAGCACTCGTGGATCGAGCAGCAGGTCCTGGAGGCCAACCCCATCCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-'5-5,'5-4,6-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(64.9=100)
A:
PF0006316=Myosin_head=PD(3.2=12.5)
C2:
PF0006316=Myosin_head=FE(6.0=100)
Main Inclusion Isoform:
ENSRNOT00000021405fB9276
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCCATTCCAGATGCTGC
R:
AGGACCTGCTGCTCGATCC
Band lengths:
256-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]