RnoEX0057488 @ rn6
Exon Skipping
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24797207-24802051:-
Coord C1 exon
chr18:24801867-24802051
Coord A exon
chr18:24800492-24800613
Coord C2 exon
chr18:24797207-24797349
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTCTGGCACTCTTTGTCAGTGG
3' ss Score
4.38
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ACCTACACGGGTTCCATCCTGGTGGCGGTGAACCCATTCCAGATGCTGCCCCTGTACACCCTGGAGCAGGTACAAATCTACTACAGCCGCCACATGGGCGAGCTGCCTCCCCATGTCTTTGCCATTGCCAACAGCTGCTACTTCAACATGAAGAAGAACAAGAGGGACCAGTGTTGCATCATCAG
Seq A exon
TGGTGAGTCTGGCGCTGGGAAGACCGAGACCACCAAGCTCATCCTTCAGTTCCTGGCCACAGTCAGCGGCCAGCACTCGTGGATCGAGCAGCAGGTCCTGGAGGCCAACCCCATCCTGGAAG
Seq C2 exon
CCTTTGGCAATGCCAAGACCATCCGCAATGACAACTCCAGCCGCTTTGGGAAGTACATCGACATCCACTTCAACTCTAGCGGGGTGATCGAGGGGGCAAGCATTGAGCACTTCCTACTGGAAAAGTCGAGGGTCTGCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-'5-6,'5-5,7-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(64.9=100)
A:
PF0006316=Myosin_head=FE(6.0=100)
C2:
PF0006316=Myosin_head=FE(6.9=100)
Main Skipping Isoform:
ENSRNOT00000021405fB9276
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCCATTCCAGATGCTGC
R:
TCACCCCGCTAGAGTTGAAGT
Band lengths:
244-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]