GgaEX6045492 @ galGal3
Exon Skipping
Gene
ENSGALG00000001936 | MYO7B
Description
NA
Coordinates
chr9:2273325-2275061:+
Coord C1 exon
chr9:2273325-2273509
Coord A exon
chr9:2274304-2274425
Coord C2 exon
chr9:2274919-2275061
Length
122 bp
Sequences
Splice sites
3' ss Seq
GATCTCATTTCTTATTGCAGTGG
3' ss Score
6.47
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
ACTTACACGGGATCTATCTTGGTAGCAGTGAATCCATACCAGCTGCTGCCTCTCTACACAGTCGATCTTATCAGGCTCTACTGCAACAAGAGGATTGGAGAGCTGCCACCTCATGTCTTTGCCATTGCAGACAACTGTTACTTCAATATGAAGAGGAATAAGAGAGATCAGTGCTGTGTGATCAG
Seq A exon
TGGAGAATCTGGAGCTGGGAAAACTGAAAGCACTAAGCTAATACTACAGTTTTTGGCAGCTGTCAGTGGCCAGCATTCCTGGATAGAGCAGCAAGTCCTAGAGGCCAACCCCATTCTGGAAG
Seq C2 exon
CTTTTGGAAATGCCAAGACAATTCGAAATGACAATTCAAGCCGCTTTGGTAAATACATTGATATCTACTTCAACCACAGTGGTGTGATAGAAGGAGCCCGGATAGAACAGTTTCTTCTGGAAAAGTCCCGAGTTTGCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.1=100)
A:
PF0006316=Myosin_head=FE(6.1=100)
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAGCTGCTGCCTCTCTAC
R:
TCCGGGCTCCTTCTATCACAC
Band lengths:
251-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]