MmuEX6000724 @ mm10
Exon Skipping
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:32007001-32013445:-
Coord C1 exon
chr18:32013261-32013445
Coord A exon
chr18:32010052-32010173
Coord C2 exon
chr18:32007001-32007143
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTCCCTGAACTCTCCTGCAGTGG
3' ss Score
7.73
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ACCTACACAGGCTCCATCCTGGTGGCTGTGAACCCATTCCAGATGCTGCCCCTGTACACCCTGGAGCAGGTACAAATCTACTACAGCCGCCACATGGGCGAGCTGCCTCCCCACATCTTCGCCATTGCCAACAGCTGCTACTTCAACATGAAGAAGAACAAGAGGGACCAGTGCTGTATCATCAG
Seq A exon
TGGCGAGTCTGGGGCCGGGAAGACCGAGACCACCAAGCTTATCCTTCAGTTCCTCGCCACGGTCAGTGGCCAGCATTCGTGGATCGAGCAACAGGTCCTGGAGGCCAACCCCATCCTGGAAG
Seq C2 exon
CCTTTGGCAATGCCAAGACCATCCGCAATGACAACTCCAGCCGCTTCGGGAAGTACATTGACATCCACTTCAATTCTAGTGGGGTGATTGAGGGCGCAAGCATTGAACACTTCCTCCTGGAGAAGTCCAGAGTCTGCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-'7-9,'7-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(33.0=100)
A:
PF0006316=Myosin_head=FE(22.2=100)
C2:
PF0006316=Myosin_head=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCCATTCCAGATGCTGC
R:
GCCCTCAATCACCCCACTAGA
Band lengths:
252-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types