HsaEX6015458 @ hg19
Exon Skipping
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:7607]
Coordinates
chr2:128324218-128331637:+
Coord C1 exon
chr2:128324218-128324402
Coord A exon
chr2:128327364-128327485
Coord C2 exon
chr2:128331495-128331637
Length
122 bp
Sequences
Splice sites
3' ss Seq
CCTGCACACCCTTTTTGCAGCGG
3' ss Score
8.63
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
ACATACACAGGCTCCATCCTGGTGGCCGTCAACCCGTTCCAGGTGCTGCCGCTCTACACCCTGGAGCAGGTACAGCTCTACTACAGCCGCCATATGGGCGAGCTGCCCCCGCATGTCTTTGCCATCGCCAACAACTGCTACTTCAGCATGAAGAGGAACAAGAGGGACCAGTGCTGCATCATCAG
Seq A exon
CGGCGAGTCTGGGGCTGGCAAGACGGAGACCACCAAGCTCATCCTGCAGTTCCTGGCCACCATCAGTGGCCAGCATTCGTGGATTGAGCAGCAGGTCCTGGAAGCCAACCCCATCCTGGAGG
Seq C2 exon
CCTTTGGAAATGCCAAGACAATCCGCAACGACAACTCAAGCCGCTTTGGGAAGTACATTGACATCTACTTTAACCCCAGCGGGGTGATCGAGGGCGCGCGCATCGAGCAATTTCTCCTGGAGAAGTCCCGGGTCTGCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.9=100)
A:
PF0006316=Myosin_head=FE(6.0=100)
C2:
PF0006316=Myosin_head=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGCTCTACTACAGCCGCC
R:
CAGACCCGGGACTTCTCCAG
Band lengths:
251-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)